RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 ARHGEF37A1IGU5 675 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 DYTNA2CJ06 578 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 HDAC3O15379 428 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 TRIM13O60858 407 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 ADAMTS4O75173 837 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 ZNF12P17014 697 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 ZNF26P17031 533 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 XRCC1P18887 633 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 HMOX2P30519 316 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 TRAP1Q12931 704 aaKnown RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 XKR4Q5GH76 650 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 SPANXN3Q5MJ09 141 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 DUS1LQ6P1R4 473 aaKnown RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 LILRA2Q8N149 483 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 TDRD5Q8NAT2 981 aaKnown RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 RMND5BQ96G75 393 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 SHCBP1LQ9BZQ2 653 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 WDR41Q9HAD4 459 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 DPP3Q9NY33 737 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 SUCOQ9UBS9 1254 aaKnown RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 A0A087WXM4 84 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 KLHL41O60662 606 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 FAM163BP0C2L3 166 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 PDGFRAP16234 1089 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 DNAJB1P25685 340 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 SPRP35270 261 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 HADHAP40939 763 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 CDKL1Q00532 357 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 PTPN11Q06124 597 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 ART3Q13508 389 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 TTC30AQ86WT1 665 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 TNIP2Q8NFZ5 429 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 RXFP2Q8WXD0 754 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 BORCS5Q969J3 196 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 EME1Q96AY2 570 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 SNX27Q96L92 541 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 EFHD1Q9BUP0 239 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 ZNF385DQ9H6B1 395 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 CLK4Q9HAZ1 481 aaKnown RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 PALMDQ9NP74 551 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 TMEM216Q9P0N5 145 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 IPO11Q9UI26 975 aaKnown RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 KIAA1257Q9ULG3 409 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 HEY1Q9Y5J3 304 aa16.13■□□□□ 0.17
HMGA1-202ENST00000347617 GTF3C5Q9Y5Q8 519 aaPredicted RBP16.13■□□□□ 0.17
HMGA1-202ENST00000347617 MYADML2A6NDP7 307 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 MATN2O00339 956 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 ACOT8O14734 319 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 TRPA1O75762 1119 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 CABYRO75952 493 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 ITGB3P05106 788 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 VDRP11473 427 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 SNX16P57768 344 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 STILQ15468 1287 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 MGAT5BQ3V5L5 792 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 SLC9B1Q4ZJI4 515 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 VWA5B1Q5TIE3 1220 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 SEL1L3Q68CR1 1132 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 CCSAPQ6IQ19 270 aaPredicted RBP16.12■□□□□ 0.17
HMGA1-202ENST00000347617 KRT80Q6KB66 452 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 MPP5Q8N3R9 675 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 PACRGLQ8N7B6 248 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 PCSK9Q8NBP7 692 aaKnown RBP16.12■□□□□ 0.17
HMGA1-202ENST00000347617 ZNF420Q8TAQ5 688 aaPredicted RBP16.12■□□□□ 0.17
HMGA1-202ENST00000347617 SLC7A14Q8TBB6 771 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 ADAMTS16Q8TE57 1224 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 PXYLP1Q8TE99 480 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 ASB9Q96DX5 294 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 UHRF1Q96T88 793 aaPredicted RBP16.12■□□□□ 0.17
HMGA1-202ENST00000347617 SLC4A5Q9BY07 1137 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 SRRDQ9UH36 339 aa16.12■□□□□ 0.17
HMGA1-202ENST00000347617 CITO14578 2027 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 M0QZ92 97 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 XPOTO43592 962 aaKnown RBP16.11■□□□□ 0.17
HMGA1-202ENST00000347617 AOC2O75106 756 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 ZMPSTE24O75844 475 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 MICAL2O94851 1124 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 METTL18O95568 372 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 KRT19P08727 400 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 IL4RP24394 825 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 TMEM62Q0P6H9 643 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 PRKAA1Q13131 559 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 CEACAM7Q14002 265 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 PPP2R5DQ14738 602 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 MAPRE2Q15555 327 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 CCDC14Q49A88 953 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 ZBED5Q49AG3 693 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 SCARA3Q6AZY7 606 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 GPR141Q7Z602 305 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 SERINC5Q86VE9 423 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 GALNT4Q8N4A0 578 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 EFCAB3Q8N7B9 438 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 LRRC52Q8N7C0 313 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 ZNF781Q8N8C0 355 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 PCDH19Q8TAB3 1148 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 HPDLQ96IR7 371 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 COX4I2Q96KJ9 171 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 ANKRD60Q9BZ19 345 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 CCDC68Q9H2F9 335 aa16.11■□□□□ 0.17
HMGA1-202ENST00000347617 C8orf4Q9NR00 106 aa16.11■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms