RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 ZBTB10Q96DT7 871 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 C2CD2Q9Y426 696 aa19.39■□□□□ 0.7
UPF1-201ENST00000262803 RIC1Q4ADV7 1423 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 CCNDBP1O95273 360 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 RPA3P35244 121 aaPredicted RBP19.39■□□□□ 0.69
UPF1-201ENST00000262803 FRG1Q14331 258 aaKnown RBP19.39■□□□□ 0.69
UPF1-201ENST00000262803 FIBCD1Q8N539 461 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 STAG3L4Q8TBR4 150 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 NMD3Q96D46 503 aaKnown RBP19.39■□□□□ 0.69
UPF1-201ENST00000262803 VMP1Q96GC9 406 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 WDR18Q9BV38 432 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 TDRKHQ9Y2W6 561 aaKnown RBP19.39■□□□□ 0.69
UPF1-201ENST00000262803 OR6C75A6NL08 312 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 PLSCR1O15162 318 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 RGS5O15539 181 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 SNX3O60493 162 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 TSPAN3O60637 253 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 HNRNPH3P31942 346 aaKnown RBP19.39■□□□□ 0.69
UPF1-201ENST00000262803 RTP1P59025 263 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 TRAF7Q6Q0C0 670 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 PRELID2Q8N945 189 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 GLMNQ92990 594 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 TKTL2Q9H0I9 626 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 NCANO14594 1321 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 EPN2O95208 641 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 LDLRP01130 860 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 PTPRAP18433 802 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 MYL12AP19105 171 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 USP41Q3LFD5 358 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 CCDC157Q569K6 752 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 TFAP2DQ7Z6R9 452 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 PSTKQ8IV42 348 aaKnown RBP19.39■□□□□ 0.69
UPF1-201ENST00000262803 NDOR1Q9UHB4 597 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 ZNF232Q9UNY5 417 aa19.39■□□□□ 0.69
UPF1-201ENST00000262803 TTPAP49638 278 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 FASTKQ14296 549 aaKnown RBP19.38■□□□□ 0.69
UPF1-201ENST00000262803 SH3BP5LQ7L8J4 393 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 SPPL2AQ8TCT8 520 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 COL5A2P05997 1499 aaPredicted RBP19.38■□□□□ 0.69
UPF1-201ENST00000262803 TEX28O15482 410 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 DCXO43602 365 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 RECQL5O94762 991 aaPredicted RBP19.38■□□□□ 0.69
UPF1-201ENST00000262803 ETS1P14921 441 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 NPR3P17342 541 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 STK32AQ8WU08 396 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 PRCCQ92733 491 aaPredicted RBP19.38■□□□□ 0.69
UPF1-201ENST00000262803 SH3GL2Q99962 352 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 C9orf16Q9BUW7 83 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 NRDE2Q9H7Z3 1164 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 SIGLEC16A6NMB1 481 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 FKTNO75072 461 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 RECQL4O94761 1208 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 ATG7O95352 703 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 HTR1BP28222 390 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 WEE1P30291 646 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 MARCKSL1P49006 195 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 PWP1Q13610 501 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 RIPOR1Q6ZS17 1223 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 HDDC2Q7Z4H3 204 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 FAM126BQ8IXS8 530 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 MAML3Q96JK9 1138 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 TMEM79Q9BSE2 394 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 SEZ6LQ9BYH1 1024 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 RACGAP1Q9H0H5 632 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 LRRC14BA6NHZ5 514 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 NEK3P51956 506 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 SULT2A1Q06520 285 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 C11orf74Q86VG3 221 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 EPHX4Q8IUS5 362 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 CCDC103Q8IW40 242 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 GDPD5Q8WTR4 605 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 MFHAS1Q9Y4C4 1052 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 SMNDC1O75940 238 aaKnown RBP eCLIP19.38■□□□□ 0.69
UPF1-201ENST00000262803 VAV1P15498 845 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 PIK3R1P27986 724 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 SYT12Q8IV01 421 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 COLGALT2Q8IYK4 626 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 RNF148Q8N7C7 305 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 PIF1Q9H611 641 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 PRKAG3Q9UGI9 489 aa19.38■□□□□ 0.69
UPF1-201ENST00000262803 FAM20BO75063 409 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 PDE5AO76074 875 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 MLYCDO95822 493 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 FAM58BPP0C7Q3 252 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 KELP23276 732 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 MAP2K5Q13163 448 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 TOP3AQ13472 1001 aaPredicted RBP19.37■□□□□ 0.69
UPF1-201ENST00000262803 INAQ16352 499 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 NOMO2Q5JPE7 1267 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 MACC1Q6ZN28 852 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 LRRC74BQ6ZQY2 392 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 ANKRD23Q86SG2 305 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 ULBP1Q9BZM6 244 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 FAM198AQ9UFP1 575 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 PNMA8CA0A1B0GUJ8 204 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 USP12O75317 370 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 CDC25CP30307 473 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 CCR3P51677 355 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 NOGQ13253 232 aa19.37■□□□□ 0.69
UPF1-201ENST00000262803 TIMM50Q3ZCQ8 353 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms