RNA–Protein interactions for RNA: ENST00000262327.9

LIG3-201, Transcript of DNA ligase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIG3, Length 3,055 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-201ENST00000262327 EDEM1Q92611 657 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 NPAS2Q99743 824 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 CPNE1Q99829 537 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 ATXN10Q9UBB4 475 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 SUN2Q9UH99 717 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 COL1A2P08123 1366 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 ZCWPW2A0A1B0GU75 182 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 MT-CO1P00395 513 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 MLNP12872 115 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 NFKB1P19838 968 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 GRM5P41594 1212 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 DPP6P42658 865 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 SERPINB8P50452 374 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 CTBP1Q13363 440 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 HNRNPDQ14103 355 aaKnown RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 PDK1Q15118 436 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 GRIK4Q16099 956 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 FBXO47Q5MNV8 452 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 MARCH8Q5T0T0 291 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 C6orf52Q5T4I8 152 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 GRTP1Q5TC63 336 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 OTOP3Q7RTS5 596 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 KBTBD6Q86V97 674 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 APLFQ8IW19 511 aaPredicted RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 BEST2Q8NFU1 509 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 DCUN1D1Q96GG9 259 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 VPS39Q96JC1 886 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 MED10Q9BTT4 135 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 RHBDL2Q9NX52 303 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 BFARQ9NZS9 450 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 DNAJB4Q9UDY4 337 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 GNEQ9Y223 722 aaKnown RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 CDY2AQ9Y6F7 541 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 CDY1Q9Y6F8 540 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 KPNA7A9QM74 516 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 PEX1O43933 1283 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 JCHAINP01591 159 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 HDCP19113 662 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 CTGFP29279 349 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 CD68P34810 354 aaPredicted RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 LIMK2P53671 638 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 FLOT2Q14254 428 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 CNGA3Q16281 694 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 DGKDQ16760 1214 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 SLC25A52Q3SY17 297 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 FSCBQ5H9T9 825 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 SLC41A1Q8IVJ1 513 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 DENND6AQ8IWF6 608 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 BHLHE22Q8NFJ8 381 aaPredicted RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 SPATA22Q8NHS9 363 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 SNX27Q96L92 541 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 MLPHQ9BV36 600 aaPredicted RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 ACE2Q9BYF1 805 aaPredicted RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 NFKBIZQ9BYH8 718 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 FAM192AQ9GZU8 254 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 SEMA6AQ9H2E6 1030 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 ATXN3LQ9H3M9 355 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 LRRC40Q9H9A6 602 aa10.22□□□□□ -0.77
LIG3-201ENST00000262327 RUVBL2Q9Y230 463 aaKnown RBP10.22□□□□□ -0.77
LIG3-201ENST00000262327 NEMP2A6NFY4 417 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 MMP3P08254 477 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 CEACAM7Q14002 265 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 USP10Q14694 798 aaKnown RBP10.21□□□□□ -0.77
LIG3-201ENST00000262327 CCL14Q16627 93 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 PQLC1Q8N2U9 271 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 PCDH20Q8N6Y1 951 aaKnown RBP10.21□□□□□ -0.77
LIG3-201ENST00000262327 LINC01465Q8N7H1 131 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 C17orf50Q8WW18 174 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 KCNK16Q96T55 309 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 C16orf70Q9BSU1 422 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 FTHL17Q9BXU8 183 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 GRIP2Q9C0E4 1043 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 ILKAPQ9H0C8 392 aaPredicted RBP10.21□□□□□ -0.77
LIG3-201ENST00000262327 LRRC4Q9HBW1 653 aa10.21□□□□□ -0.77
LIG3-201ENST00000262327 DDX18Q9NVP1 670 aaKnown RBP10.21□□□□□ -0.77
LIG3-201ENST00000262327 hCG_2014768A0A024R1R8 64 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 YJEFN3A6XGL0 299 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 HACD1B0YJ81 288 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 CAPN15O75808 1086 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 TFEBP19484 476 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 FGFR3P22607 806 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 GJA8P48165 433 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 CHN2P52757 468 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 MPP1Q00013 466 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 POU6F1Q14863 301 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 CCDC153Q494R4 210 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 SPANXN3Q5MJ09 141 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 STXBP5Q5T5C0 1151 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 UGT2A3Q6UWM9 527 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 STRADAQ7RTN6 431 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 LCA5Q86VQ0 697 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 SPATA24Q86W54 205 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 RNF135Q8IUD6 432 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 PSTKQ8IV42 348 aaKnown RBP10.21□□□□□ -0.78
LIG3-201ENST00000262327 LILRA2Q8N149 483 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 APPL2Q8NEU8 664 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 NAT14Q8WUY8 206 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 LRGUKQ96M69 825 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 RHOBTB2Q9BYZ6 727 aa10.21□□□□□ -0.78
LIG3-201ENST00000262327 PIN4Q9Y237 131 aaKnown RBP10.21□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms