RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 RIGQ13278 110 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 DAG1Q14118 895 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 SLC29A2Q14542 456 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 KCNAB1Q14722 419 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 ELF2Q15723 593 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 SYT16Q17RD7 645 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 ZNF876PQ49A33 203 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 MINDY4Q4G0A6 757 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 MANEALQ5VSG8 457 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 PLAG1Q6DJT9 500 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 DMKNQ6E0U4 476 aaPredicted RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 TMEM71Q6P5X7 295 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 KIAA0408Q6ZU52 694 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 NOTCH2NLQ7Z3S9 236 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 KRT28Q7Z3Y7 464 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 C14orf80Q86SX3 495 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 ERC1Q8IUD2 1116 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 FSTL5Q8N475 847 aaPredicted RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 SRBD1Q8N5C6 995 aaKnown RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 SMCR8Q8TEV9 937 aaPredicted RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 SLC35F5Q8WV83 523 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 JDP2Q8WYK2 163 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 OVCA2Q8WZ82 227 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 PMM1Q92871 262 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 ZNF333Q96JL9 665 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 LINC00479Q96M42 142 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 GPR78Q96P69 363 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 ABHD14AQ9BUJ0 271 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 TRIM15Q9C019 465 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 TXNRD2Q9NNW7 524 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 TMEM160Q9NX00 188 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 OGFRQ9NZT2 677 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 AFF4Q9UHB7 1163 aaKnown RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 TNFSF13BQ9Y275 285 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 B3GNT3Q9Y2A9 372 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 PCDHB2Q9Y5E7 798 aa0.56□□□□□ -2.32
VPS35-212ENST00000640313 SRPRBQ9Y5M8 271 aaKnown RBP0.56□□□□□ -2.32
VPS35-212ENST00000640313 LMTK3Q96Q04 1460 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 A0A0J9YWU9 116 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 NDUFAF8A1L188 74 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 CFAP69A5D8W1 941 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PMS2P5A8MQ11 134 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 KLLNB2CW77 178 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 HNRNPCL2B2RXH8 293 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 KCNJ18B7U540 433 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 C16orf97H3BN30 126 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 RAB27BO00194 218 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 GOLIM4O00461 696 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 NR5A2O00482 541 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 APAF1O14727 1248 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PMM2O15305 246 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 NCK2O43639 380 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 RASSF9O75901 435 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 INMTO95050 263 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 KAT7O95251 611 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PARNO95453 639 aaKnown RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 PMS2P2O95744 297 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PRB2P02812 416 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 ANXA2P07355 339 aaKnown RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 PRSS1P07477 247 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 CT47B1P0C2W7 299 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 DUX4L4P0CJ87 422 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 U2AF1L5P0DN76 240 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 CETPP11597 493 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 SRCP12931 536 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 TRIM27P14373 513 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 BRAFP15056 766 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PECAM1P16284 738 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 TPH1P17752 444 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 IGFBP2P18065 325 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 CD53P19397 219 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 FGFR2P21802 821 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 IBSPP21815 317 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 GATA2P23769 480 aaPredicted RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 MCM3P25205 808 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 MXI1P50539 228 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 CACNB3P54284 484 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 TRA2BP62995 288 aaKnown RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 MRPS5P82675 430 aaKnown RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 U2AF1Q01081 240 aaKnown RBP eCLIP0.55□□□□□ -2.32
VPS35-212ENST00000640313 SEMA3BQ13214 749 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PMS2P11Q13670 270 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 SLC5A9Q2M3M2 681 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 SLC35G1Q2M3R5 365 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 ARHGAP29Q52LW3 1261 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 XKR9Q5GH70 373 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 C10orf76Q5T2E6 689 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 RNF220Q5VTB9 566 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 KLHDC7AQ5VTJ3 777 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 HEPHL1Q6MZM0 1159 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 ERAP2Q6P179 960 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 AAGABQ6PD74 315 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 DARS2Q6PI48 645 aaKnown RBP0.55□□□□□ -2.32
VPS35-212ENST00000640313 METTL7BQ6UX53 244 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 C16orf89Q6UX73 402 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 PIK3AP1Q6ZUJ8 805 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 UNC13DQ70J99 1090 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 MON1BQ7L1V2 547 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 IGFN1Q86VF2 1251 aa0.55□□□□□ -2.32
VPS35-212ENST00000640313 DGKHQ86XP1 1220 aa0.55□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms