RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 ENDOD1O94919 500 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 IGLV3-25P01717 112 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 CTSLP07711 333 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 RHOCP08134 193 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 SLC2A3P11169 496 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 CKMT1AP12532 417 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 KRT10P13645 584 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 HNRNPA2B1P22626 353 aaKnown RBP15.39■□□□□ 0.05
SYNE2-228ENST00000639659 RRM1P23921 792 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 GNA15P30679 374 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 CHRNA3P32297 505 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 PLK1P53350 603 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 UCNP55089 124 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 RHDQ02161 417 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 GCNT1Q02742 428 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 PDCLQ13371 301 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 AUHQ13825 339 aaKnown RBP15.39■□□□□ 0.05
SYNE2-228ENST00000639659 ZNF284Q2VY69 593 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 CRTC1Q6UUV9 634 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 HORMAD1Q86X24 394 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 PASD1Q8IV76 773 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 LSMEM2Q8N112 164 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 CACTIN-AS1Q8N1I8 211 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 EHBP1Q8NDI1 1231 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 LMO3Q8TAP4 145 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 IFI44Q8TCB0 444 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 VCPIP1Q96JH7 1222 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 CEP63Q96MT8 703 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 SLC4A5Q9BY07 1137 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 TNKS2Q9H2K2 1166 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 SYNDIG1Q9H7V2 258 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 UBE2TQ9NPD8 197 aaPredicted RBP15.39■□□□□ 0.05
SYNE2-228ENST00000639659 EVA1BQ9NVM1 165 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 HS3ST4Q9Y661 456 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 CFAP46Q8IYW2 2715 aa15.39■□□□□ 0.05
SYNE2-228ENST00000639659 CPED1A4D0V7 1026 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 K7ERQ8 282 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 MT-CO1P00395 513 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 SRCP12931 536 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 RPL34P49207 117 aaKnown RBP15.38■□□□□ 0.05
SYNE2-228ENST00000639659 DUSP3P51452 185 aaPredicted RBP15.38■□□□□ 0.05
SYNE2-228ENST00000639659 CDKN3Q16667 212 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 COBLL1Q53SF7 1204 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 CDCP2Q5VXM1 449 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 LINGO4Q6UY18 593 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 GCNT7Q6ZNI0 430 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 Q6ZSR6 202 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 BEND5Q7L4P6 421 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 C14orf80Q86SX3 495 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 CHST14Q8NCH0 376 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 ALG14Q96F25 216 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 SEMA4CQ9C0C4 833 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 POLR1BQ9H9Y6 1135 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 THSD1Q9NS62 852 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 NLGN3Q9NZ94 848 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 SATB2Q9UPW6 733 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 CTNND2Q9UQB3 1225 aa15.38■□□□□ 0.05
SYNE2-228ENST00000639659 FAM170AA1A519 330 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 NEMP2A6NFY4 417 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 CAPN8A6NHC0 703 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 A6NNZ2 444 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 K7ESM1 405 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 ADCY5O95622 1261 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 CD44P16070 742 aaKnown RBP15.37■□□□□ 0.05
SYNE2-228ENST00000639659 RBMS1P29558 406 aaKnown RBP15.37■□□□□ 0.05
SYNE2-228ENST00000639659 RECQLP46063 649 aaPredicted RBP15.37■□□□□ 0.05
SYNE2-228ENST00000639659 LSSP48449 732 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 DNA2P51530 1060 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 KRT83P78385 493 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 CCDC15Q0P6D6 951 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 ARHGAP44Q17R89 818 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 FMR1NBQ8N0W7 255 aaPredicted RBP15.37■□□□□ 0.05
SYNE2-228ENST00000639659 SLC22A18ASQ8N1D0 253 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 STK32AQ8WU08 396 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 ZNF606Q8WXB4 792 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 HIC2Q96JB3 615 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 IPO11Q9UI26 975 aaKnown RBP15.37■□□□□ 0.05
SYNE2-228ENST00000639659 VPS51Q9UID3 782 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 ZFR2Q9UPR6 939 aaKnown RBP15.37■□□□□ 0.05
SYNE2-228ENST00000639659 SNX10Q9Y5X0 201 aa15.37■□□□□ 0.05
SYNE2-228ENST00000639659 RNF103O00237 685 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 P4HA2O15460 535 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 PAGE1O75459 146 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 CLDN11O75508 207 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 CNTN5O94779 1100 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 AFPP02771 609 aaKnown RBP15.36■□□□□ 0.05
SYNE2-228ENST00000639659 PRNPP04156 253 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 GIMD1P0DJR0 217 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 STX17P56962 302 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 HNRNPKP61978 463 aaKnown RBP eCLIP15.36■□□□□ 0.05
SYNE2-228ENST00000639659 ARSIQ5FYB1 569 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 KIAA1614Q5VZ46 1190 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 GJB7Q6PEY0 223 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 FAM183BPQ6ZVS7 135 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 ERN2Q76MJ5 926 aaKnown RBP15.36■□□□□ 0.05
SYNE2-228ENST00000639659 EFL1Q7Z2Z2 1120 aaKnown RBP15.36■□□□□ 0.05
SYNE2-228ENST00000639659 TFAP2DQ7Z6R9 452 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 TMEM110Q86TL2 294 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 CREBRFQ8IUR6 639 aa15.36■□□□□ 0.05
SYNE2-228ENST00000639659 FAM181AQ8N9Y4 354 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms