RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 INO80DQ53TQ3 878 aaPredicted RBP15□□□□□ -0.01
CD48-203ENST00000613788 TMCO4Q5TGY1 634 aa15□□□□□ -0.01
CD48-203ENST00000613788 HEATR6Q6AI08 1181 aaKnown RBP15□□□□□ -0.01
CD48-203ENST00000613788 C12orf50Q8NA57 414 aaPredicted RBP15□□□□□ -0.01
CD48-203ENST00000613788 MNS1Q8NEH6 495 aa15□□□□□ -0.01
CD48-203ENST00000613788 KCNV2Q8TDN2 545 aa15□□□□□ -0.01
CD48-203ENST00000613788 QKIQ96PU8 341 aaKnown RBP eCLIP15□□□□□ -0.01
CD48-203ENST00000613788 UBA2Q9UBT2 640 aaPredicted RBP15□□□□□ -0.01
CD48-203ENST00000613788 FEZ2Q9UHY8 353 aaPredicted RBP15□□□□□ -0.01
CD48-203ENST00000613788 SLC8A2Q9UPR5 921 aa15□□□□□ -0.01
CD48-203ENST00000613788 ERVW-1Q9UQF0 538 aa15□□□□□ -0.01
CD48-203ENST00000613788 ZNF148Q9UQR1 794 aa15□□□□□ -0.01
CD48-203ENST00000613788 STARD13Q9Y3M8 1113 aa15□□□□□ -0.01
CD48-203ENST00000613788 CFAP69A5D8W1 941 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 NPC1O15118 1278 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 PHF2O75151 1096 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 NEBLO76041 1014 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 VASPP50552 380 aaPredicted RBP14.99□□□□□ -0.01
CD48-203ENST00000613788 ZXDAP98168 799 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 LMNB2Q03252 620 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 HNRNPDQ14103 355 aaKnown RBP14.99□□□□□ -0.01
CD48-203ENST00000613788 OASLQ15646 514 aaKnown RBP14.99□□□□□ -0.01
CD48-203ENST00000613788 MARC1Q5VT66 337 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 FSTL4Q6MZW2 842 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 LINGO4Q6UY18 593 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 ZNF572Q7Z3I7 529 aaPredicted RBP14.99□□□□□ -0.01
CD48-203ENST00000613788 SIX5Q8N196 739 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 BBS5Q8N3I7 341 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 ATP11CQ8NB49 1132 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 KDM1BQ8NB78 822 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 SPATA4Q8NEY3 305 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 HTR3CQ8WXA8 447 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 PDFQ9HBH1 243 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 HAUS2Q9NVX0 235 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 HS3ST2Q9Y278 367 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 COL4A2P08572 1712 aa14.99□□□□□ -0.01
CD48-203ENST00000613788 KRBA1A5PL33 1030 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 SHISA7A6NL88 538 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 K7EQS6 105 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 STK10O94804 968 aaKnown RBP14.98□□□□□ -0.01
CD48-203ENST00000613788 ITGAVP06756 1048 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 CCNB1P14635 433 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 CD72P21854 359 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 RBL1P28749 1068 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 CHRNA3P32297 505 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 CTSOP43234 321 aaPredicted RBP14.98□□□□□ -0.01
CD48-203ENST00000613788 CLCN6P51797 869 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 LBRQ14739 615 aaKnown RBP14.98□□□□□ -0.01
CD48-203ENST00000613788 CCDC137Q6PK04 289 aaKnown RBP14.98□□□□□ -0.01
CD48-203ENST00000613788 LEKR1Q6ZMV7 388 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 B4GALNT4Q76KP1 1039 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 ATL2Q8NHH9 583 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 CYB5D2Q8WUJ1 264 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 LRRN4Q8WUT4 740 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 MAML1Q92585 1016 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 RPL10LQ96L21 214 aaKnown RBP14.98□□□□□ -0.01
CD48-203ENST00000613788 RUNDC3BQ96NL0 473 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 VAT1Q99536 393 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 NDRG2Q9UN36 371 aaKnown RBP14.98□□□□□ -0.01
CD48-203ENST00000613788 COL4A3Q01955 1670 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 NUP205Q92621 2012 aa14.98□□□□□ -0.01
CD48-203ENST00000613788 KANSL1LA0AUZ9 987 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 KCNK1O00180 336 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 KCNN4O15554 427 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 PEX11BO96011 259 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 EGFP01133 1207 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 JCHAINP01591 159 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 HNRNPLP14866 589 aaKnown RBP eCLIP14.97□□□□□ -0.01
CD48-203ENST00000613788 COILP38432 576 aaPredicted RBP14.97□□□□□ -0.01
CD48-203ENST00000613788 FNTAP49354 379 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 SERPINH1P50454 418 aaKnown RBP14.97□□□□□ -0.01
CD48-203ENST00000613788 ACCSLQ4AC99 568 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 DGKKQ5KSL6 1271 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 SFTPA1Q8IWL2 248 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 CCDC105Q8IYK2 499 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 SH2D3CQ8N5H7 860 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 CEP112Q8N8E3 955 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 GRK7Q8WTQ7 553 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 SORCS1Q8WY21 1168 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 EDAQ92838 391 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 TMEM121Q9BTD3 319 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 USP29Q9HBJ7 922 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 RBM22Q9NW64 420 aaKnown RBP eCLIP14.97□□□□□ -0.01
CD48-203ENST00000613788 SEPT10Q9P0V9 454 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 THAP10Q9P2Z0 257 aaPredicted RBP14.97□□□□□ -0.01
CD48-203ENST00000613788 SEPT3Q9UH03 358 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 AMACRQ9UHK6 382 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 SGK1O00141 431 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 STK25O00506 426 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 DCXO43602 365 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 ATP9BO43861 1147 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 CD160O95971 181 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 MT-CO1P00395 513 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 SRCP12931 536 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 VAV1P15498 845 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 MMP13P45452 471 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 KCNJ1P48048 391 aa14.97□□□□□ -0.01
CD48-203ENST00000613788 STK19P49842 368 aaPredicted RBP14.97□□□□□ -0.01
CD48-203ENST00000613788 IFI35P80217 286 aaPredicted RBP14.97□□□□□ -0.01
CD48-203ENST00000613788 MRPS21P82921 87 aaKnown RBP14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms