RNA–Protein interactions for RNA: ENST00000613670.4

LIG1-221, Transcript of DNA ligase 1, humanhuman

TSL 1 (best) BASIC

Gene LIG1, Length 3,949 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-221ENST00000613670 CDHR5Q9HBB8 845 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 GBA2Q9HCG7 927 aaPredicted RBP12.8□□□□□ -0.36
LIG1-221ENST00000613670 RRN3Q9NYV6 651 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 TUBGCP4Q9UGJ1 667 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 SUN2Q9UH99 717 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 CROTQ9UKG9 612 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 TMCO1Q9UM00 188 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 SLCO1B7G3V0H7 640 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 ZBTB24O43167 697 aaPredicted RBP12.8□□□□□ -0.36
LIG1-221ENST00000613670 H2AFYO75367 372 aaKnown RBP12.8□□□□□ -0.36
LIG1-221ENST00000613670 SEMA5AQ13591 1074 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 KYAT1Q16773 422 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 OTUD3Q5T2D3 398 aaPredicted RBP12.8□□□□□ -0.36
LIG1-221ENST00000613670 DHFR2Q86XF0 187 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 LRTOMTQ8WZ04 291 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 VPS50Q96JG6 964 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 RBBP8Q99708 897 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 FAM95CA0A1B0GW59 222 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 FAM149AA5PLN7 773 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 NEMP2A6NFY4 417 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 PPEF2O14830 753 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 MDM4O15151 490 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 YBX3P16989 372 aaKnown RBP eCLIP12.8□□□□□ -0.36
LIG1-221ENST00000613670 TAF6P49848 677 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 CDH15P55291 814 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 CDH17Q12864 832 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 ATP1A4Q13733 1029 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 ADGRE1Q14246 886 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 PAN2Q504Q3 1202 aaKnown RBP12.8□□□□□ -0.36
LIG1-221ENST00000613670 APOBEC3FQ8IUX4 373 aaKnown RBP12.8□□□□□ -0.36
LIG1-221ENST00000613670 SCN4BQ8IWT1 228 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 ZNF276Q8N554 614 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 SEPHS2Q99611 448 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 GOLGA2P5Q9HBQ8 144 aa12.8□□□□□ -0.36
LIG1-221ENST00000613670 ADGRA2Q96PE1 1338 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 SNNO75324 88 aaPredicted RBP12.79□□□□□ -0.36
LIG1-221ENST00000613670 CKMT2P17540 419 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 LRPAP1P30533 357 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 LIMK2P53671 638 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 ADRM1Q16186 407 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 INSCQ1MX18 579 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 ADCY4Q8NFM4 1077 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 NXNL1Q96CM4 212 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 PCYT2Q99447 389 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 GPR20Q99678 358 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 COQ10BQ9H8M1 238 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 SARS2Q9NP81 518 aaKnown RBP12.79□□□□□ -0.36
LIG1-221ENST00000613670 SETD4Q9NVD3 440 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 PTTG2Q9NZH5 202 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 RSL24D1Q9UHA3 163 aaKnown RBP12.79□□□□□ -0.36
LIG1-221ENST00000613670 DMTF1Q9Y222 760 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 ANKRD12Q6UB98 2062 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 INPP4BO15327 924 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 DNAJA2O60884 412 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 MAP3K10Q02779 954 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 CELF3Q5SZQ8 465 aaKnown RBP12.79□□□□□ -0.36
LIG1-221ENST00000613670 SLC9A4Q6AI14 798 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 MAPK15Q8TD08 544 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 TMEM174Q8WUU8 243 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 LPGAT1Q92604 370 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 DLG3Q92796 817 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 VTI1BQ9UEU0 232 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 TDRKHQ9Y2W6 561 aaKnown RBP12.79□□□□□ -0.36
LIG1-221ENST00000613670 TRIM38O00635 465 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 PABPC4LP0CB38 370 aaKnown RBP12.79□□□□□ -0.36
LIG1-221ENST00000613670 ZNF23P17027 643 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 TPP2P29144 1249 aaPredicted RBP12.79□□□□□ -0.36
LIG1-221ENST00000613670 SLC7A2P52569 658 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 CDH13P55290 713 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 TREML2Q5T2D2 321 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 ILDR2Q71H61 639 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 ULBP1Q9BZM6 244 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 PKD2L2Q9NZM6 624 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 DSEQ9UL01 958 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 UBQLN1Q9UMX0 589 aaKnown RBP12.79□□□□□ -0.36
LIG1-221ENST00000613670 SNX10Q9Y5X0 201 aa12.79□□□□□ -0.36
LIG1-221ENST00000613670 MLNP12872 115 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 MTTPP55157 894 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 MBTD1Q05BQ5 628 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 NAB1Q13506 487 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 C11orf91Q3C1V1 193 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 IL23RQ5VWK5 629 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 NCBP2-AS2Q69YL0 99 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 ZDHHC17Q8IUH5 632 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 HERC6Q8IVU3 1022 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 CLEC4FQ8N1N0 589 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 ANKRD52Q8NB46 1076 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 NRBF2Q96F24 287 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 NUDT5Q9UKK9 219 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 PAIP2BQ9ULR5 123 aaKnown RBP12.78□□□□□ -0.36
LIG1-221ENST00000613670 SF3B1O75533 1304 aaKnown RBP eCLIP12.78□□□□□ -0.364e-6■■■■■ 81.2
LIG1-221ENST00000613670 TCRBV5S1A1TA0A578 114 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 SOWAHBA6NEL2 793 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 TMEM114B3SHH9 223 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 H3BRB1 525 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 GSTA4O15217 222 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 CLOCKO15516 846 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 CABYRO75952 493 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 RECQL4O94761 1208 aa12.78□□□□□ -0.36
LIG1-221ENST00000613670 ARIH2O95376 493 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms