RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 BMP6P22004 513 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 CHRNA3P32297 505 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 NNMTP40261 264 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 OXCT1P55809 520 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 PCBP4P57723 403 aaKnown RBP6.27□□□□□ -1.41
VRK3-220ENST00000600259 CLDN2P57739 230 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 GABREP78334 506 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 KRT85P78386 507 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 GCNT1Q02742 428 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 CENPCQ03188 943 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 LRRC63Q05C16 580 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 VAC14Q08AM6 782 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 AUHQ13825 339 aaKnown RBP6.27□□□□□ -1.41
VRK3-220ENST00000600259 LY6DQ14210 128 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 FZD2Q14332 565 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 ISXQ2M1V0 245 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 ACCSLQ4AC99 568 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 SETMARQ53H47 684 aaPredicted RBP6.27□□□□□ -1.41
VRK3-220ENST00000600259 ZNF542PQ5EBM4 170 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 TPRG1LQ5T0D9 272 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 ARHGAP40Q5TG30 622 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 OTUD1Q5VV17 481 aaPredicted RBP6.27□□□□□ -1.41
VRK3-220ENST00000600259 RNF219Q5W0B1 726 aaPredicted RBP6.27□□□□□ -1.41
VRK3-220ENST00000600259 SEL1L3Q68CR1 1132 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 TMC6Q7Z403 805 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 DSG4Q86SJ6 1040 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 HORMAD1Q86X24 394 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 CCDC117Q8IWD4 279 aaPredicted RBP6.27□□□□□ -1.41
VRK3-220ENST00000600259 DEFB106AQ8N104 65 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 PPM1KQ8N3J5 372 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 ATP6V0D2Q8N8Y2 350 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 CHST14Q8NCH0 376 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 TMIEQ8NEW7 156 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 MS4A3Q96HJ5 214 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 CEP63Q96MT8 703 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 GSDMAQ96QA5 445 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 LGMNQ99538 433 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 KLF6Q99612 283 aaPredicted RBP6.27□□□□□ -1.41
VRK3-220ENST00000600259 MYOCQ99972 504 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 DPH1Q9BZG8 443 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 FZD3Q9NPG1 666 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 ST7Q9NRC1 585 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 NLGN3Q9NZ94 848 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 HS3ST2Q9Y278 367 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 CEP83Q9Y592 693 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 ENTPD2Q9Y5L3 495 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 HS3ST4Q9Y661 456 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 UBR5O95071 2799 aaPredicted RBP6.27□□□□□ -1.41
VRK3-220ENST00000600259 FLNCQ14315 2725 aa6.27□□□□□ -1.41
VRK3-220ENST00000600259 AHCTF1Q8WYP5 2266 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 SPTY2D1-AS1A0A0U1RR47 76 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 PMS2P1A4D2B8 440 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 EME2A4GXA9 379 aaPredicted RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 DRGXA6NNA5 263 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 BECN2A8MW95 431 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 CDRT15L2A8MXV6 281 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 PPP1R3GB7ZBB8 358 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 C1QTNF3-AMACRE9PGA6 284 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 PYCARD-AS1I3L0S3 204 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 K7ENP7 123 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 FFAR2O15552 330 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 KLK10O43240 276 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 SPINT1O43278 529 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 SNAP91O60641 907 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 CLDN11O75508 207 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 ZMPSTE24O75844 475 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 NEBLO76041 1014 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 CD160O95971 181 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 PAK4O96013 591 aaPredicted RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 CSF2P04141 144 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 GLI1P08151 1106 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 C6P13671 934 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 TFE3P19532 575 aaPredicted RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 HNRNPA2B1P22626 353 aaKnown RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 AKT2P31751 481 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 CCR1P32246 355 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 GGCXP38435 758 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 UCNP55089 124 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 TMPRSS3P57727 454 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 NUCB2P80303 420 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 DAB2P98082 770 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 ALFQ53S48 1182 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 TAF1BQ53T94 588 aaPredicted RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 TTC39BQ5VTQ0 682 aaPredicted RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 TTI2Q6NXR4 508 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 INO80CQ6PI98 192 aaPredicted RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 FOXR2Q6PJQ5 311 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 Q6ZSR6 202 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 DCP2Q8IU60 420 aaKnown RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 TRIM59Q8IWR1 403 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 EXD3Q8N9H8 876 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 KCNE4Q8WWG9 221 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 NT5C3BQ969T7 300 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 VCPIP1Q96JH7 1222 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 RPRD1AQ96P16 312 aaPredicted RBP6.26□□□□□ -1.41
VRK3-220ENST00000600259 DEPDC7Q96QD5 511 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 MED15Q96RN5 788 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 PPP1R9BQ96SB3 815 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 CPXM1Q96SM3 734 aa6.26□□□□□ -1.41
VRK3-220ENST00000600259 TSG101Q99816 390 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms