RNA–Protein interactions for RNA: ENST00000586058.1

LIG3-206, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 581 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-206ENST00000586058 TSPAN3O60637 253 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 TTC4O95801 387 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 ADH1CP00326 375 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 JCHAINP01591 159 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 ABHD2P08910 425 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 NUDT17P0C025 328 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 PAMP19021 973 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 NFKB1P19838 968 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 CES1P23141 567 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 FSHRP23945 695 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 NFKBIAP25963 317 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 SLC6A4P31645 630 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 MAGEA4P43358 317 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 PGFP49763 221 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 PAPOLAP51003 745 aaKnown RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 CDH17Q12864 832 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 SLC10A2Q12908 348 aaPredicted RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 NR1H3Q13133 447 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 MPP3Q13368 585 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 SERINC3Q13530 473 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 LAMB3Q13751 1172 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 LBRQ14739 615 aaKnown RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 STAT4Q14765 748 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 C5orf22Q49AR2 442 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 ALFQ53S48 1182 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 FAM133BQ5BKY9 247 aaKnown RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 RARS2Q5T160 578 aaKnown RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 MPP7Q5T2T1 576 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 FAXCQ5TGI0 409 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 RNF219Q5W0B1 726 aaPredicted RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 NADSYN1Q6IA69 706 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 FAM109BQ6ICB4 259 aaPredicted RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 RETSATQ6NUM9 610 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 RHBDF2Q6PJF5 856 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 EP400NLQ6ZTU2 488 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 HTR3DQ70Z44 454 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 GAREM2Q75VX8 874 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 B4GALNT4Q76KP1 1039 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 GET4Q7L5D6 327 aaPredicted RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 C14orf80Q86SX3 495 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 NLRP14Q86W24 1093 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 CIR1Q86X95 450 aaPredicted RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 RELL1Q8IUW5 271 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 YAF2Q8IY57 180 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 CFAP52Q8N1V2 620 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 CELF5Q8N6W0 485 aaKnown RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 NAT8LQ8N9F0 302 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 GLIS1Q8NBF1 620 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 PPHLN1Q8NEY8 458 aaKnown RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 SHKBP1Q8TBC3 707 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 SH3RF2Q8TEC5 729 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 USP33Q8TEY7 942 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 DEPDC1BQ8WUY9 529 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 USP13Q92995 863 aaPredicted RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 IGSF8Q969P0 613 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 E2F7Q96AV8 911 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 IFT43Q96FT9 208 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 HMCESQ96FZ2 354 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 RIPOR3Q96MK2 946 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 ZIM3Q96PE6 472 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 XPO6Q96QU8 1125 aaKnown RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 PRMT1Q99873 361 aaKnown RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 SPON2Q9BUD6 331 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 CEP41Q9BYV8 373 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 MAGEB5Q9BZ81 275 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 RNF38Q9H0F5 515 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 IGFLR1Q9H665 355 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 C10orf88Q9H8K7 445 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 USP29Q9HBJ7 922 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 ETNK1Q9HBU6 452 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 NT5MQ9NPB1 228 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 VPS45Q9NRW7 570 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 GKN1Q9NS71 199 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 DNAJC17Q9NVM6 304 aaKnown RBP6.31□□□□□ -1.4
LIG3-206ENST00000586058 RBM22Q9NW64 420 aaKnown RBP eCLIP6.31□□□□□ -1.42e-8■■■■■ 35.1
LIG3-206ENST00000586058 HCFC1R1Q9NWW0 138 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 BCCIPQ9P287 314 aaKnown RBP eCLIP6.31□□□□□ -1.4
LIG3-206ENST00000586058 SEPT3Q9UH03 358 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 STOML2Q9UJZ1 356 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 NEU3Q9UQ49 428 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 CHMP2BQ9UQN3 213 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 MAD1L1Q9Y6D9 718 aa6.31□□□□□ -1.4
LIG3-206ENST00000586058 GOLGA6L7A0A1B0GV03 622 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 A0A1W2PPC1 479 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 SMIM23A6NLE4 172 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 NEDD8-MDP1E9PL57 170 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 F5H423 210 aaPredicted RBP6.3□□□□□ -1.4
LIG3-206ENST00000586058 H0YGN5 161 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 RASGRF2O14827 1237 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 MAFKO60675 156 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 CDH16O75309 829 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 CNTN5O94779 1100 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 TMEM63AO94886 807 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 NFATC1O95644 943 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 AP2A1O95782 977 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 POLBP06746 335 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 SERPINF2P08697 491 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 TCF3P15923 654 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 GJA1P17302 382 aa6.3□□□□□ -1.4
LIG3-206ENST00000586058 HOXB8P17481 243 aaPredicted RBP6.3□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms