RNA–Protein interactions for RNA: ENST00000585941.5

LIG3-205, Transcript of DNA ligase 3, humanhuman

TSL 1 (best)

Gene LIG3, Length 1,699 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-205ENST00000585941 EPHB3P54753 998 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 IL10RBQ08334 325 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 POLD3Q15054 466 aaPredicted RBP14.45□□□□□ -0.1
LIG3-205ENST00000585941 SLC1A5Q15758 541 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 ALFQ53S48 1182 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 RABGAP1LQ5R372 815 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 MARC1Q5VT66 337 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 FAM117BQ6P1L5 589 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 C6orf89Q6UWU4 347 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 ITIH5Q86UX2 942 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 TCP10LQ8TDR4 215 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 LRRC8CQ8TDW0 803 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 HMCESQ96FZ2 354 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 CPNE1Q99829 537 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 IL23AQ9NPF7 189 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 VPS45Q9NRW7 570 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 NSMCE4AQ9NXX6 385 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 ZFATQ9P243 1243 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 ZNF212Q9UDV6 495 aa14.45□□□□□ -0.1
LIG3-205ENST00000585941 SNX3O60493 162 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 USP12O75317 370 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 HLA-DQB2P05538 268 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 OR1E1P30953 314 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 GP5P40197 560 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 ANKRD20A4Q4UJ75 823 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 POTEHQ6S545 545 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 RASSF3Q86WH2 238 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 TEX26Q8N6G2 289 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 ZNF669Q96BR6 464 aaPredicted RBP14.44□□□□□ -0.1
LIG3-205ENST00000585941 ELAC2Q9BQ52 826 aaKnown RBP14.44□□□□□ -0.1
LIG3-205ENST00000585941 TRIM56Q9BRZ2 755 aaKnown RBP14.44□□□□□ -0.1
LIG3-205ENST00000585941 TMEM106CQ9BVX2 250 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 KIFC1Q9BW19 673 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 MRM3Q9HC36 420 aaKnown RBP14.44□□□□□ -0.1
LIG3-205ENST00000585941 FGFR1OP2Q9NVK5 253 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 PIH1D1Q9NWS0 290 aaKnown RBP14.44□□□□□ -0.1
LIG3-205ENST00000585941 ASB3Q9Y575 518 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 KIAA1671Q9BY89 1806 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 KIAA0100Q14667 2235 aaKnown RBP14.44□□□□□ -0.1
LIG3-205ENST00000585941 CHD5Q8TDI0 1954 aa14.44□□□□□ -0.1
LIG3-205ENST00000585941 ANAPC1Q9H1A4 1944 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 GOLGA8RI6L899 631 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 COCHO43405 550 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 RFPL1O75677 317 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 PEX11BO96011 259 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 ITGB8P26012 769 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 KCNQ1P51787 676 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 SERINC3Q13530 473 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 PABPC1LQ4VXU2 614 aaKnown RBP14.43□□□□□ -0.1
LIG3-205ENST00000585941 PCID2Q5JVF3 399 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 STXBP5Q5T5C0 1151 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 GRTP1Q5TC63 336 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 NADSYN1Q6IA69 706 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 PACS1Q6VY07 963 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 SRLQ86TD4 932 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 LGI2Q8N0V4 545 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 IMP4Q96G21 291 aaKnown RBP14.43□□□□□ -0.1
LIG3-205ENST00000585941 ZNF599Q96NL3 588 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 FSD1LQ9BXM9 530 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 PITPNM3Q9BZ71 974 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 MAGEH1Q9H213 219 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 RXFP1Q9HBX9 757 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 RRP15Q9Y3B9 282 aaKnown RBP14.43□□□□□ -0.1
LIG3-205ENST00000585941 MIA3Q5JRA6 1907 aa14.43□□□□□ -0.1
LIG3-205ENST00000585941 ZCWPW2A0A1B0GU75 182 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 ATP9BO43861 1147 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 LATS1O95835 1130 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 DHRS4L1P0CG22 281 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 FOXN2P32314 431 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 ADRA1AP35348 466 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 CDH4P55283 916 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 CERCAMQ5T4B2 595 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 PDPK2PQ6A1A2 396 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 ZNF354CQ86Y25 554 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 TRIM42Q8IWZ5 723 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 PPHLN1Q8NEY8 458 aaKnown RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 IPMKQ8NFU5 416 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 SPATA22Q8NHS9 363 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 PSMG2Q969U7 264 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 FCRL3Q96P31 734 aaPredicted RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 SRPK1Q96SB4 655 aaKnown RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 KLF6Q99612 283 aaPredicted RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 ARNT2Q9HBZ2 717 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 UBP1Q9NZI7 540 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 PRDM4Q9UKN5 801 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 STARD13Q9Y3M8 1113 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 USP15Q9Y4E8 981 aaPredicted RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 INSL5Q9Y5Q6 135 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 UGT1A9O60656 530 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 PRAMEF11O60813 436 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 CLDN11O75508 207 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 GJB5O95377 273 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 OAS1P00973 400 aaKnown RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 ADRA1DP25100 572 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 CRHR1P34998 444 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 SPRP35270 261 aaPredicted RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 CSE1LP55060 971 aaKnown RBP14.42□□□□□ -0.1
LIG3-205ENST00000585941 TWF1Q12792 350 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 IFT88Q13099 833 aa14.42□□□□□ -0.1
LIG3-205ENST00000585941 OLIG2Q13516 323 aa14.42□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms