RNA–Protein interactions for RNA: ENST00000572809.1

NUP88-205, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 771 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-205ENST00000572809 ZNF366Q8N895 744 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 MSANTD4Q8NCY6 345 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 NEK11Q8NG66 645 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 OR2T3Q8NH03 318 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 CEP76Q8TAP6 659 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 CPA5Q8WXQ8 436 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 TOE1Q96GM8 510 aaKnown RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 PRICKLE1Q96MT3 831 aaPredicted RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 NPY6RQ99463 290 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 PRMT1Q99873 361 aaKnown RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 EDEM2Q9BV94 578 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 NUP58Q9BVL2 599 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 NUSAP1Q9BXS6 441 aaKnown RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 ZCCHC2Q9C0B9 1178 aaKnown RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 NAT10Q9H0A0 1025 aaKnown RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 SIK2Q9H0K1 926 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 GANQ9H2C0 597 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 NLRC4Q9NPP4 1024 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 CD93Q9NPY3 652 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 PRSS16Q9NQE7 514 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 TMEM51Q9NW97 253 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 WSB2Q9NYS7 404 aaPredicted RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 RRN3Q9NYV6 651 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP7.67□□□□□ -1.18
NUP88-205ENST00000572809 USP36Q9P275 1121 aaKnown RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 VTI1BQ9UEU0 232 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 EVLQ9UI08 416 aaPredicted RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 INTS6Q9UL03 887 aaKnown RBP7.67□□□□□ -1.18
NUP88-205ENST00000572809 STAP1Q9ULZ2 295 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 SLC6A14Q9UN76 642 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 SIK3Q9Y2K2 1263 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 DAAM1Q9Y4D1 1078 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 AK5Q9Y6K8 562 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 FRYLO94915 3013 aa7.67□□□□□ -1.18
NUP88-205ENST00000572809 CEP250Q9BV73 2442 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 LNP1A1A4G5 178 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 FAM170AA1A519 330 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 CDX4O14627 284 aaPredicted RBP7.66□□□□□ -1.18
NUP88-205ENST00000572809 PAGE1O75459 146 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 RECKO95980 971 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 SRPRAP08240 638 aaKnown RBP7.66□□□□□ -1.18
NUP88-205ENST00000572809 ZNF18P17022 549 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 CHRNB2P17787 502 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 HOXD12P35452 270 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 NNMTP40261 264 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 CSKP41240 450 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 CXCR3P49682 368 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 SULT1E1P49888 294 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 PLK1P53350 603 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 OXCT1P55809 520 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 JAM2P57087 298 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 CDR2Q01850 454 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 DEUP1Q05D60 604 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 SLC12A1Q13621 1099 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 AUHQ13825 339 aaKnown RBP7.66□□□□□ -1.18
NUP88-205ENST00000572809 NCAPHQ15003 741 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 SLC25A52Q3SY17 297 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 C2CD6Q53TS8 623 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 PPM1JQ5JR12 505 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 PITRM1Q5JRX3 1037 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 WDR45BQ5MNZ6 344 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 BRMS1LQ5PSV4 323 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 RABGAP1LQ5R372 815 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 FAM102AQ5T9C2 384 aaPredicted RBP7.66□□□□□ -1.18
NUP88-205ENST00000572809 DAB2IPQ5VWQ8 1189 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 PEAR1Q5VY43 1037 aaPredicted RBP7.66□□□□□ -1.18
NUP88-205ENST00000572809 FBXL22Q6P050 247 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 RABEPKQ7Z6M1 372 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 APCDD1Q8J025 514 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 CCAR2Q8N163 923 aaKnown RBP7.66□□□□□ -1.18
NUP88-205ENST00000572809 KDM1BQ8NB78 822 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 CADM4Q8NFZ8 388 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 IGSF8Q969P0 613 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 NT5C3BQ969T7 300 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 RPRD1AQ96P16 312 aaPredicted RBP7.66□□□□□ -1.18
NUP88-205ENST00000572809 SPAG5Q96R06 1193 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 ERGIC2Q96RQ1 377 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 PPP1R9BQ96SB3 815 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 GPR174Q9BXC1 333 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 FBRSQ9HAH7 460 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 TMEM9BQ9NQ34 198 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 TMEM63CQ9P1W3 806 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 ERVW-1Q9UQF0 538 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 PAXBP1Q9Y5B6 917 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 PCDHGC4Q9Y5F7 938 aa7.66□□□□□ -1.18
NUP88-205ENST00000572809 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP7.65□□□□□ -1.18
NUP88-205ENST00000572809 A0A1B0GVM2 712 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 TARSL2A2RTX5 802 aaKnown RBP7.65□□□□□ -1.18
NUP88-205ENST00000572809 TCAF2A6NFQ2 919 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 SMTNL1A8MU46 457 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 LGALS16A8MUM7 142 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 METTL12A8MUP2 240 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 TTC34A8MYJ7 566 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 GOLGA8SH3BPF8 625 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 EPHB6O15197 1021 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 ATXN7O15265 892 aaPredicted RBP7.65□□□□□ -1.18
NUP88-205ENST00000572809 BNIP3LO60238 219 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 RNASEH1O60930 286 aaKnown RBP7.65□□□□□ -1.18
NUP88-205ENST00000572809 SIN3BO75182 1162 aa7.65□□□□□ -1.18
NUP88-205ENST00000572809 CLDN11O75508 207 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms