RNA–Protein interactions for RNA: ENST00000572253.5

CCDC40-207, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 3,962 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-207ENST00000572253 ZNF410Q86VK4 478 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 WNT8BQ93098 351 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 MFSD3Q96ES6 412 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 ZCWPW2A0A1B0GU75 182 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 TRIM38O00635 465 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 BCAS2O75934 225 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-207ENST00000572253 COL6A2P12110 1019 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 PSMC3P17980 439 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 PNPLA4P41247 253 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 EN1Q05925 392 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-207ENST00000572253 RFTN1Q14699 578 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-207ENST00000572253 NADK2Q4G0N4 442 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 GLRA4Q5JXX5 417 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 C9orf57Q5W0N0 161 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 ZNF772Q68DY9 489 aaPredicted RBP10.94□□□□□ -0.66
CCDC40-207ENST00000572253 SNX27Q96L92 541 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 VAT1Q99536 393 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 EFHD1Q9BUP0 239 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 RHOJQ9H4E5 214 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 RIMS3Q9UJD0 308 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 MGAMO43451 1857 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 TK2O00142 265 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 HUS1O60921 280 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 ERCC2P18074 760 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 RPL34P49207 117 aaKnown RBP10.94□□□□□ -0.66
CCDC40-207ENST00000572253 ARL13BQ3SXY8 428 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 CERCAMQ5T4B2 595 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 KLHDC10Q6PID8 442 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 RNF148Q8N7C7 305 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 GBA3Q9H227 469 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 ACOT9Q9Y305 439 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 TRIP11Q15643 1979 aa10.94□□□□□ -0.66
CCDC40-207ENST00000572253 TFAP2AP05549 437 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 GLRBP48167 497 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 AIF1P55008 147 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 CEACAM7Q14002 265 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 SLC27A1Q6PCB7 646 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 LINC00523Q86TU6 105 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 GPR22Q99680 433 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 APOL2Q9BQE5 337 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 MED10Q9BTT4 135 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 PDGFCQ9NRA1 345 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 NFKBIEO00221 500 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 PHGDHO43175 533 aaKnown RBP10.93□□□□□ -0.66
CCDC40-207ENST00000572253 VAPBO95292 243 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 AMHP03971 560 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 DNAJB1P25685 340 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 ATXN3P54252 364 aaPredicted RBP10.93□□□□□ -0.66
CCDC40-207ENST00000572253 SLC12A2P55011 1212 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 CDH17Q12864 832 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 STX5Q13190 355 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 OLIG2Q13516 323 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 DPYSQ14117 519 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 GRM3Q14832 879 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 KLC3Q6P597 504 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 TRIML2Q8N7C3 387 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 SLC7A14Q8TBB6 771 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 KCTD4Q8WVF5 259 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 C18orf25Q96B23 403 aaPredicted RBP10.93□□□□□ -0.66
CCDC40-207ENST00000572253 ZBTB26Q9HCK0 441 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 UBAP1Q9NZ09 502 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 PADI4Q9UM07 663 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 CYP2B6P20813 491 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 MSX2P35548 267 aaPredicted RBP10.93□□□□□ -0.66
CCDC40-207ENST00000572253 TAF6P49848 677 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 COG7P83436 770 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 C6orf52Q5T4I8 152 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 LINC01465Q8N7H1 131 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 CEP70Q8NHQ1 597 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 LZICQ8WZA0 190 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 SLC9A7Q96T83 725 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 NPY6RQ99463 290 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 APBA2Q99767 749 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 PKP2Q99959 881 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 IRAK4Q9NWZ3 460 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 GTSE1Q9NYZ3 720 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 HACD3Q9P035 362 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 PHF24Q9UPV7 400 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 NME7Q9Y5B8 376 aa10.93□□□□□ -0.66
CCDC40-207ENST00000572253 DCLK1O15075 740 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ZBTB24O43167 697 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 GRID2O43424 1007 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 HCRTO43612 131 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 USP2O75604 605 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 TPH1P17752 444 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 NFKB1P19838 968 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 TCN1P20061 433 aaPredicted RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ADRA1BP35368 520 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 CCNA1P78396 465 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 PPIDQ08752 370 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 SV2CQ496J9 727 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 INTS6LQ5JSJ4 861 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 LRRC8EQ6NSJ5 796 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 KBTBD7Q8WVZ9 684 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 MAML3Q96JK9 1138 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 FAR2Q96K12 515 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 ZMAT2Q96NC0 199 aaKnown RBP10.92□□□□□ -0.66
CCDC40-207ENST00000572253 TIMMDC1Q9NPL8 285 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 CHRAC1Q9NRG0 131 aa10.92□□□□□ -0.66
CCDC40-207ENST00000572253 NCKIPSDQ9NZQ3 722 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms