RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 RANBP1P43487 201 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 HPCAP84074 193 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 IRF9Q00978 393 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 MYLK3Q32MK0 819 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 C7orf31Q8N865 590 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 MIPOL1Q8TD10 442 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 NTAN1Q96AB6 310 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 MAELQ96JY0 434 aaKnown RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 SNX27Q96L92 541 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 NPY6RQ99463 290 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 AGAP2Q99490 1192 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 PKP2Q99959 881 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 MRPL1Q9BYD6 325 aaKnown RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 MAGEB5Q9BZ81 275 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 PIH1D1Q9NWS0 290 aaKnown RBP16.55■□□□□ 0.24
SHMT2-231ENST00000557433 NME7Q9Y5B8 376 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 NR2E3Q9Y5X4 410 aa16.55■□□□□ 0.24
SHMT2-231ENST00000557433 CITO14578 2027 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 CCDC160A6NGH7 325 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 CHRNGP07510 517 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 TXNP10599 105 aaKnown RBP16.54■□□□□ 0.24
SHMT2-231ENST00000557433 EPHA3P29320 983 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 STX5Q13190 355 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 PPM1LQ5SGD2 360 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 LINC00523Q86TU6 105 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 LILRA2Q8N149 483 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 TMEM151AQ8N4L1 468 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 AFAP1L2Q8N4X5 818 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 ITFG2Q969R8 447 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 ZNF597Q96LX8 424 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 PRPF18Q99633 342 aaKnown RBP16.54■□□□□ 0.24
SHMT2-231ENST00000557433 GRIP2Q9C0E4 1043 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 AK5Q9Y6K8 562 aa16.54■□□□□ 0.24
SHMT2-231ENST00000557433 TNS1Q9HBL0 1735 aaKnown RBP16.54■□□□□ 0.24
SHMT2-231ENST00000557433 DNAJC25-GNG10A0A024R161 153 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 NEMP1O14524 444 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 CD4P01730 458 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 SPATA31D3P0C874 917 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 YBX3P16989 372 aaKnown RBP eCLIP16.53■□□□□ 0.247e-8■□□□□ 9
SHMT2-231ENST00000557433 ZNF23P17027 643 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 ADORA2BP29275 332 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 PNPLA4P41247 253 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 TUBA4AP68366 448 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 MS4A2Q01362 244 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 SCAPQ12770 1279 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 LAMC2Q13753 1193 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 PTK2BQ14289 1009 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 PRPSAP1Q14558 356 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 TREML2Q5T2D2 321 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 NAPEPLDQ6IQ20 393 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 SPATA31D4Q6ZUB0 917 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 ZC3HC1Q86WB0 502 aaKnown RBP16.53■□□□□ 0.24
SHMT2-231ENST00000557433 CHERPQ8IWX8 916 aaKnown RBP16.53■□□□□ 0.24
SHMT2-231ENST00000557433 CEP70Q8NHQ1 597 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 TNIP3Q96KP6 325 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 ZNF560Q96MR9 790 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 NUF2Q9BZD4 464 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 SNX25Q9H3E2 840 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 OCEL1Q9H607 264 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 GDAP2Q9NXN4 497 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 IRF6O14896 467 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 CFLARO15519 480 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 VAPBO95292 243 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 FAM200BP0CF97 657 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 GNL1P36915 607 aaPredicted RBP16.53■□□□□ 0.24
SHMT2-231ENST00000557433 DNAJB13P59910 316 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 IGBP1P78318 339 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 CDH17Q12864 832 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 PPIL2Q13356 520 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 DCTN2Q13561 401 aaKnown RBP16.53■□□□□ 0.24
SHMT2-231ENST00000557433 TRIM25Q14258 630 aaKnown RBP16.53■□□□□ 0.24
SHMT2-231ENST00000557433 KIZQ2M2Z5 673 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 C9orf57Q5W0N0 161 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 PIWIL4Q7Z3Z4 852 aaKnown RBP16.53■□□□□ 0.24
SHMT2-231ENST00000557433 CNKSR2Q8WXI2 1034 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 KCTD13Q8WZ19 329 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 WNT8BQ93098 351 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 HDAC11Q96DB2 347 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 ATXN7L3BQ96GX2 97 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 SLC2A13Q96QE2 648 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 EFHD1Q9BUP0 239 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 KIFC1Q9BW19 673 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 UNC93B1Q9H1C4 597 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 CAB39LQ9H9S4 337 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 IARS2Q9NSE4 1012 aaKnown RBP16.53■□□□□ 0.24
SHMT2-231ENST00000557433 ZDHHC2Q9UIJ5 367 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 APPL1Q9UKG1 709 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 SARDHQ9UL12 918 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 SLC39A10Q9ULF5 831 aa16.53■□□□□ 0.24
SHMT2-231ENST00000557433 UBQLN1Q9UMX0 589 aaKnown RBP16.53■□□□□ 0.24
SHMT2-231ENST00000557433 COPG1Q9Y678 874 aaKnown RBP16.53■□□□□ 0.24
SHMT2-231ENST00000557433 E2F8A0AVK6 867 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 TCAF2A6NFQ2 919 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 TARM1B6A8C7 271 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 TRMUO75648 421 aaKnown RBP16.52■□□□□ 0.23
SHMT2-231ENST00000557433 ZNF26P17031 533 aaPredicted RBP16.52■□□□□ 0.23
SHMT2-231ENST00000557433 NAGLUP54802 743 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 PKNOX1P55347 436 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 ZNF33AQ06730 810 aa16.52■□□□□ 0.23
SHMT2-231ENST00000557433 USP10Q14694 798 aaKnown RBP16.52■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms