RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 NT5MQ9NPB1 228 aa12.99□□□□□ -0.33
VIPAS39-206ENST00000553888 LCHNA4D1U4 455 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 WASH4PA8MWX3 477 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 PRPF4O43172 522 aaKnown RBP eCLIP12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 TSPAN3O60637 253 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 FGF18O76093 207 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 LINC00271P0C7V0 271 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 OR1E1P30953 314 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 HECTD3Q5T447 861 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 FAM47EQ6ZV65 393 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 DNAJB7Q7Z6W7 309 aaPredicted RBP12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 DDX53Q86TM3 631 aaKnown RBP12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 UMODL1-AS1Q8N2C9 162 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 BANPQ8N9N5 519 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 BADQ92934 168 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 ATXN7L3BQ96GX2 97 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 VAT1Q99536 393 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 ELAC2Q9BQ52 826 aaKnown RBP12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 TRPC7Q9HCX4 862 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 DENND4CQ5VZ89 1909 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 IQANK1A0A1B0GTG1 560 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 E2F8A0AVK6 867 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 NMBRP28336 390 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 HTR7P34969 479 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 ITKQ08881 620 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 NIPAL4Q0D2K0 466 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 NUGGCQ68CJ6 796 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 SH2D5Q6ZV89 423 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 SEC16BQ96JE7 1060 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 PRICKLE1Q96MT3 831 aaPredicted RBP12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 AGAP2Q99490 1192 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 CCDC134Q9H6E4 229 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 PPCSQ9HAB8 311 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 SAMD15Q9P1V8 674 aa12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 PPARGC1AQ9UBK2 798 aaKnown RBP12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 ZFP37Q9Y6Q3 630 aaPredicted RBP12.98□□□□□ -0.33
VIPAS39-206ENST00000553888 EBAG9O00559 213 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 STC2O76061 302 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 CNPP09543 421 aaKnown RBP12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 GLDCP23378 1020 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 CORO1AP31146 461 aaKnown RBP12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 ZXDBP98169 803 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 DSC2Q02487 901 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 RING1Q06587 406 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 RAB33AQ14088 237 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 POU6F1Q14863 301 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 TTC39BQ5VTQ0 682 aaPredicted RBP12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 RASSF3Q86WH2 238 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 PGBD5Q8N414 524 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 SLC13A1Q9BZW2 595 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 SLCO1B3Q9NPD5 702 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 MRPL17Q9NRX2 175 aaKnown RBP12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 COMMD8Q9NX08 183 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 TRPM5Q9NZQ8 1165 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 INSL5Q9Y5Q6 135 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 MYOFQ9NZM1 2061 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 DRGXA6NNA5 263 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 ACSL4O60488 711 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 TAC1P20366 129 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 DNAJC3Q13217 504 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 POLD3Q15054 466 aaPredicted RBP12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 KLHL23Q8NBE8 558 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 OR7D4Q8NG98 312 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 TBL1YQ9BQ87 522 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 SP110Q9HB58 689 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 IL23AQ9NPF7 189 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 BFARQ9NZS9 450 aa12.97□□□□□ -0.33
VIPAS39-206ENST00000553888 ZCWPW2A0A1B0GU75 182 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 SRRM3A6NNA2 597 aaPredicted RBP12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 F5H5T6 163 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 CACNG3O60359 315 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 RAMP2O60895 175 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 RFPL1O75677 317 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 NEBLO76041 1014 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 ALDH1A2O94788 518 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 GJA1P17302 382 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 SYN1P17600 705 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 ELF1P32519 619 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 PGGT1BP53609 377 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 PRPSAP1Q14558 356 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 TPGS2Q68CL5 300 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 TXNDC8Q6A555 127 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 DENND5AQ6IQ26 1287 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 CGB2Q6NT52 195 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 SLC25A41Q8N5S1 370 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 BHMTQ93088 406 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 MRGPRX2Q96LB1 330 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 FCRL5Q96RD9 977 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 LRRC40Q9H9A6 602 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 PCMTD2Q9NV79 361 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 SENP1Q9P0U3 644 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 MUSKO15146 869 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 TGM5O43548 720 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 LPXNO60711 386 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 POLBP06746 335 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 NDST2P52849 883 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 CYP4F8P98187 520 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 IFT88Q13099 833 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 ANKRD20A4Q4UJ75 823 aa12.96□□□□□ -0.33
VIPAS39-206ENST00000553888 TMCO4Q5TGY1 634 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms