RNA–Protein interactions for RNA: ENST00000552440.5

USP44-208, Transcript of ubiquitin specific peptidase 44, human

TSL 5 BASIC

Gene USP44, Length 1,818 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
USP44-208	ENST00000552440	SKIL	P12757	684 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	CDH2	P19022	906 aa	Predicted RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	PTPN3	P26045	913 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	ACVR2A	P27037	513 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	AVPR2	P30518	371 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	ARCN1	P48444	511 aa	Known RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	PIK3CG	P48736	1102 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	DIO1	P49895	249 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	TUBB4B	P68371	445 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	TBL3	Q12788	808 aa	Known RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	SNX1	Q13596	522 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	SNTB1	Q13884	538 aa	Known RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	GRM4	Q14833	912 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	CRY2	Q49AN0	593 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	OTUD7B	Q6GQQ9	843 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	TTI2	Q6NXR4	508 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	MSANTD1	Q6ZTZ1	278 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	DSG4	Q86SJ6	1040 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	SPATA2L	Q8IUW3	424 aa	Predicted RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	UNC5B	Q8IZJ1	945 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	PQLC1	Q8N2U9	271 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	AFAP1	Q8N556	730 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	PIK3C3	Q8NEB9	887 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440		Q8TCH9	128 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	SLC13A3	Q8WWT9	602 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	PRCC	Q92733	491 aa	Predicted RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	NKD2	Q969F2	451 aa	Predicted RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	RBM17	Q96I25	401 aa	Known RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	FIZ1	Q96SL8	496 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	RUFY1	Q96T51	708 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	TBCD	Q9BTW9	1192 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	MLPH	Q9BV36	600 aa	Predicted RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	SLC5A7	Q9GZV3	580 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	SCAND2P	Q9GZW5	306 aa	Predicted RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	TAOK3	Q9H2K8	898 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	TTYH1	Q9H313	450 aa	Predicted RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	CLSTN2	Q9H4D0	955 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	STN1	Q9H668	368 aa	Known RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	BCO1	Q9HAY6	547 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	ZSCAN32	Q9NX65	697 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	CWC15	Q9P013	229 aa	Known RBP	4.36	□□□□□ -1.71
USP44-208	ENST00000552440	TRPS1	Q9UHF7	1281 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	CAPN11	Q9UMQ6	739 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	CHKB	Q9Y259	395 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	ASB3	Q9Y575	518 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	CLCA3P	Q9Y6N3	262 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440	TTC21B	Q7Z4L5	1316 aa		4.36	□□□□□ -1.71
USP44-208	ENST00000552440		A0A087WWL8	130 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	TRBC2	A0A5B9	178 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CTAGE15	A4D2H0	777 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440		H0YCG3	227 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	RAB27B	O00194	218 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	HNRNPCL1	O60812	293 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SEC14L2	O76054	403 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	KNG1	P01042	644 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ABCB1	P08183	1280 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CYP21A2	P08686	494 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CTAGE8	P0CG41	777 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	NEFH	P12036	1026 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PRG2	P13727	222 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	DDC	P20711	480 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CAST	P20810	708 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SP100	P23497	879 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PBX3	P40426	434 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ARL1	P40616	181 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CCR10	P46092	362 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	GLRB	P48167	497 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	GBX2	P52951	348 aa	Predicted RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PER3	P56645	1201 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PRAME	P78395	509 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ARHGAP8	P85298	464 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ZBTB17	Q13105	803 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	RIPK1	Q13546	671 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SLC29A2	Q14542	456 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	USP10	Q14694	798 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	R3HDM1	Q15032	1099 aa	Known RBP	4.35	□□□□□ -1.71
USP44-208	ENST00000552440	HYAL4	Q2M3T9	481 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PHF19	Q5T6S3	580 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	TMEM200B	Q69YZ2	307 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ETFRF1	Q6IPR1	90 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CACNA2D4	Q7Z3S7	1137 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CTAGE6	Q86UF2	777 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	CTAGE4	Q8IX94	777 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	PALM2	Q8IXS6	379 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440		Q8N1X5	172 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SFRP1	Q8N474	314 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	DCLK2	Q8N568	766 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SLC15A4	Q8N697	577 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	DNAJC5G	Q8N7S2	189 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ANKRD44	Q8N8A2	993 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	IL17RC	Q8NAC3	791 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	OR7D4	Q8NG98	312 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ZNF480	Q8WV37	535 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	POMGNT1	Q8WZA1	660 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	EDA	Q92838	391 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	RAB7B	Q96AH8	199 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	ELP4	Q96EB1	424 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	SAAL1	Q96ER3	474 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	FAM81B	Q96LP2	452 aa		4.35	□□□□□ -1.71
USP44-208	ENST00000552440	TCEANC2	Q96MN5	208 aa		4.35	□□□□□ -1.71

Retrieved 100 of 20,778 RNA–protein pairs in 222.3 ms