RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 RAXQ9Y2V3 346 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 SNX10Q9Y5X0 201 aa8.7□□□□□ -1.02
USP28-215ENST00000545608 FAM170AA1A519 330 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 ENC1O14682 589 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 MCF2LO15068 1137 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 CLDN11O75508 207 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 DAB1O75553 588 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 ADCY5O95622 1261 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 LDOC1O95751 146 aaPredicted RBP8.69□□□□□ -1.02
USP28-215ENST00000545608 MT-CO1P00395 513 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 MAT2AP31153 395 aaKnown RBP8.69□□□□□ -1.02
USP28-215ENST00000545608 KRT9P35527 623 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 MTIF2P46199 727 aaKnown RBP8.69□□□□□ -1.02
USP28-215ENST00000545608 CLDN6P56747 220 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 NXPH1P58417 271 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 RNASE9P60153 205 aaKnown RBP8.69□□□□□ -1.02
USP28-215ENST00000545608 KCNMA1Q12791 1236 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 CNTN1Q12860 1018 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 DNAJC3Q13217 504 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 COL9A2Q14055 689 aaPredicted RBP8.69□□□□□ -1.02
USP28-215ENST00000545608 COL28A1Q2UY09 1125 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 ALFQ53S48 1182 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 AGBL4Q5VU57 503 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 NAPEPLDQ6IQ20 393 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 Q6ZVU0 165 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 SLC26A9Q7LBE3 791 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 PRPF39Q86UA1 669 aaKnown RBP8.69□□□□□ -1.02
USP28-215ENST00000545608 FAM71AQ8IYT1 594 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 ZNF683Q8IZ20 524 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 GALNT15Q8N3T1 639 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 SH2D3CQ8N5H7 860 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 EID2Q8N6I1 236 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 PLPP7Q8NBV4 271 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 ZNF397Q8NF99 534 aaPredicted RBP8.69□□□□□ -1.02
USP28-215ENST00000545608 PIP4K2CQ8TBX8 421 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 HNRNPLLQ8WVV9 542 aaKnown RBP8.69□□□□□ -1.02
USP28-215ENST00000545608 CNDP2Q96KP4 475 aaKnown RBP8.69□□□□□ -1.02
USP28-215ENST00000545608 NOX5Q96PH1 765 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 PPP1R9BQ96SB3 815 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 PSMB7Q99436 277 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 NPY6RQ99463 290 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 GDF3Q9NR23 364 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 TMPRSS4Q9NRS4 437 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 PIGVQ9NUD9 493 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 ARHGEF38Q9NXL2 777 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 SLC25A13Q9UJS0 675 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 VPS28Q9UK41 221 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 TBC1D30Q9Y2I9 924 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 CFAP47Q6ZTR5 3102 aa8.69□□□□□ -1.02
USP28-215ENST00000545608 APC2O95996 2303 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 DRGXA6NNA5 263 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 K7ERQ8 282 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 RNF103O00237 685 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 SLC7A4O43246 635 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 PLRG1O43660 514 aaKnown RBP8.68□□□□□ -1.02
USP28-215ENST00000545608 BNIP3LO60238 219 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 SNAP91O60641 907 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 CTSLP07711 333 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 SRCP12931 536 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 ZNF18P17022 549 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 EPHA8P29322 1005 aaPredicted RBP8.68□□□□□ -1.02
USP28-215ENST00000545608 RXRGP48443 463 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 CXCR3P49682 368 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 SULT1E1P49888 294 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 CDH4P55283 916 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 TAS2R38P59533 333 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 UBE2HP62256 183 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 MTA1Q13330 715 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 MAN2A1Q16706 1144 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 TPD52L1Q16890 204 aaPredicted RBP8.68□□□□□ -1.02
USP28-215ENST00000545608 INAVAQ3KP66 663 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 VWA3BQ502W6 1294 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 SLC45A4Q5BKX6 768 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 MIIPQ5JXC2 388 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 ARTNQ5T4W7 220 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 FAM46CQ5VWP2 391 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 KANSL1Q7Z3B3 1105 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 DSG4Q86SJ6 1040 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 MFSD2AQ8NA29 543 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 MLKLQ8NB16 471 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 NT5C3BQ969T7 300 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 TBCBQ99426 244 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 OCSTAMPQ9BR26 566 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 TKTL2Q9H0I9 626 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 MUC3BQ9H195 1237 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 NDST4Q9H3R1 872 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 WDCPQ9H6R7 721 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 SYNCQ9H7C4 482 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 ERVMER34-1Q9H9K5 563 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.68□□□□□ -1.02
USP28-215ENST00000545608 DKK4Q9UBT3 224 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 TPX2Q9ULW0 747 aaKnown RBP8.68□□□□□ -1.02
USP28-215ENST00000545608 CA5BQ9Y2D0 317 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 PCDHGA1Q9Y5H4 931 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 TMEM131Q92545 1883 aa8.68□□□□□ -1.02
USP28-215ENST00000545608 GOLGA4Q13439 2230 aaKnown RBP8.68□□□□□ -1.02
USP28-215ENST00000545608 A0A0D9SEW6 157 aa8.67□□□□□ -1.02
USP28-215ENST00000545608 C1QTNF3-AMACRE9PGA6 284 aa8.67□□□□□ -1.02
USP28-215ENST00000545608 ALOX15BO15296 676 aa8.67□□□□□ -1.02
USP28-215ENST00000545608 YKT6O15498 198 aa8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 47.2 ms