RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 GALCP54803 685 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 EFHC2Q5JST6 749 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 LINGO4Q6UY18 593 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 DRC7Q8IY82 874 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 CPLX3Q8WVH0 158 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 ARHGEF2Q92974 986 aaKnown RBP14.52□□□□□ -0.09
USP28-209ENST00000540925 BIRC7Q96CA5 298 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 ZNF653Q96CK0 615 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 TRIM11Q96F44 468 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 PEBP4Q96S96 227 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 DNAJC7Q99615 494 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 NEUROG2Q9H2A3 272 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 OSGEPQ9NPF4 335 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 TMEM9BQ9NQ34 198 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 FSCN3Q9NQT6 498 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 SUSD2Q9UGT4 822 aa14.52□□□□□ -0.09
USP28-209ENST00000540925 SPEGQ15772 3267 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 A0A087X0T9 212 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 A0A1B0GTW7 788 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 MEI4A8MW99 385 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 ARHGAP33O14559 1287 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 GJB3O75712 270 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 FAM228BP0C875 321 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 PSMA2P25787 234 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 HTR7P34969 479 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 SERPINH1P50454 418 aaKnown RBP14.51□□□□□ -0.09
USP28-209ENST00000540925 ADPRHP54922 357 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 BNC1Q01954 994 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 SLC20A2Q08357 652 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 ASTE1Q2TB18 679 aaPredicted RBP14.51□□□□□ -0.09
USP28-209ENST00000540925 RWDD4Q6NW29 188 aaKnown RBP14.51□□□□□ -0.09
USP28-209ENST00000540925 C22orf39Q6P5X5 142 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 RTL3Q8N8U3 475 aaKnown RBP14.51□□□□□ -0.09
USP28-209ENST00000540925 OR8D1Q8WZ84 308 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 CEP44Q9C0F1 390 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 MAGEH1Q9H213 219 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 ATP13A1Q9HD20 1204 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 EIF2B4Q9UI10 523 aaKnown RBP14.51□□□□□ -0.09
USP28-209ENST00000540925 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP14.51□□□□□ -0.09
USP28-209ENST00000540925 SCINQ9Y6U3 715 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 ADAMTS9Q9P2N4 1935 aa14.51□□□□□ -0.09
USP28-209ENST00000540925 ASCC3Q8N3C0 2202 aaKnown RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 CHD8Q9HCK8 2581 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 EIF3CLB5ME19 914 aaKnown RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 RNF103O00237 685 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 CBX4O00257 560 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 BCAT2O15382 392 aaPredicted RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 LRCH4O75427 683 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 RNASEH2AO75792 299 aaKnown RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 IL1BP01584 269 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 CFIP05156 583 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 CYP1A2P05177 515 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 TPM3P06753 285 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 ETFBP38117 255 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 GFPT1Q06210 699 aaPredicted RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 SFSWAPQ12872 951 aaKnown RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 CA9Q16790 459 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 ACCSLQ4AC99 568 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 TDRD12Q587J7 1177 aaKnown RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 AGBL4Q5VU57 503 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 KIAA0895LQ68EN5 471 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 SPECC1LQ69YQ0 1117 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 RETSATQ6NUM9 610 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 SCYL2Q6P3W7 929 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 DSG4Q86SJ6 1040 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 VSTM4Q8IW00 320 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 PLPP6Q8IY26 295 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 RGL4Q8IZJ4 473 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 UMODL1-AS1Q8N2C9 162 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 HDDC3Q8N4P3 179 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 ZCCHC9Q8N567 271 aaKnown RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 ATP11CQ8NB49 1132 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 TMIEQ8NEW7 156 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 OR2T34Q8NGX1 318 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 ISG20Q96AZ6 181 aaKnown RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 EIF3CQ99613 913 aaKnown RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 EPAS1Q99814 870 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 SPON2Q9BUD6 331 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 EBF2Q9HAK2 575 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 DNAI1Q9UI46 699 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 NCKAP1Q9Y2A7 1128 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 ACTL7AQ9Y615 435 aa14.5□□□□□ -0.09
USP28-209ENST00000540925 MAP1BP46821 2468 aaKnown RBP14.5□□□□□ -0.09
USP28-209ENST00000540925 UPK3BL1B0FP48 263 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 UPK3BL2E5RIL1 263 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 SLC7A4O43246 635 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 CBFA2T2O43439 604 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 LATO43561 262 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 RAMP2O60895 175 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 GNSP15586 552 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 CD27P26842 260 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 EPHB2P29323 1055 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 MIPP30301 263 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 CHRNA3P32297 505 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 PCK1P35558 622 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 CCR5P51681 352 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 ACAP1Q15027 740 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 ERMARDQ5T6L9 678 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 FAM46CQ5VWP2 391 aa14.49□□□□□ -0.09
USP28-209ENST00000540925 IL31Q6EBC2 164 aa14.49□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms