RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 PPHLN1Q8NEY8 458 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 UHMK1Q8TAS1 419 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 KLHL6Q8WZ60 621 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 TOP1MTQ969P6 601 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SGF29Q96ES7 293 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 RRNAD1Q96FB5 475 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 SIPA1Q96FS4 1042 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 DCAF5Q96JK2 942 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 HYLS1Q96M11 299 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SAMD11Q96NU1 681 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SETDB2Q96T68 719 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 HNRNPABQ99729 332 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 MKNK1Q9BUB5 465 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 PHF20Q9BVI0 1012 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 GRIP2Q9C0E4 1043 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 VPS11Q9H270 941 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 KCNN2Q9H2S1 579 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 OR51B5Q9H339 312 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 IFT22Q9H7X7 185 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ARMT1Q9H993 441 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 RC3H2Q9HBD1 1191 aaKnown RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 TMEM138Q9NPI0 162 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ARHGEF4Q9NR80 690 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 FAIMQ9NVQ4 179 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 ZNF358Q9NW07 568 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 HPF1Q9NWY4 346 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 KLHL28Q9NXS3 571 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 IFT80Q9P2H3 777 aaPredicted RBP3.63□□□□□ -1.83
USP53-205ENST00000509769 STAP1Q9ULZ2 295 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 CA5BQ9Y2D0 317 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 SNX24Q9Y343 169 aa3.63□□□□□ -1.83
USP53-205ENST00000509769 CFAP65Q6ZU64 1925 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 PAPPAQ13219 1627 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 KIF1BO60333 1816 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ZW10O43264 779 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 HOXA2O43364 376 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 BANF1O75531 89 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PALMO75781 387 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RNASEH2AO75792 299 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 SOAT2O75908 522 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 LRIG2O94898 1065 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TGDSO95455 350 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 C8BP07358 591 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 CD19P15391 556 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PAICSP22234 425 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 MAT2AP31153 395 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 ABCG1P45844 678 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RGS4P49798 205 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 NCALDP61601 193 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 IL5RAQ01344 420 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RGS1Q08116 209 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TFCP2Q12800 502 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 GRB14Q14449 540 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 COL28A1Q2UY09 1125 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 KYAT3Q6YP21 454 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 RNF19BQ6ZMZ0 732 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MTSS1LQ765P7 747 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SSX9Q7RTT3 188 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 GALNT7Q86SF2 657 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MYCT1Q8N699 235 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 DDX51Q8N8A6 666 aaKnown RBP eCLIP3.62□□□□□ -1.83
USP53-205ENST00000509769 ABTB2Q8N961 1025 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TMEM35BQ8NCS4 154 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SIMC1Q8NDZ2 872 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 EXD1Q8NHP7 514 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RDH11Q8TC12 318 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 URGCPQ8TCY9 931 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TMC2Q8TDI7 906 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 DNAJB3Q8WWF6 145 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ASB12Q8WXK4 309 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ZBTB8AQ96BR9 441 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SLC25A36Q96CQ1 311 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RCN3Q96D15 328 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 HES6Q96HZ4 224 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 C7orf26Q96N11 449 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MCCC1Q96RQ3 725 aaPredicted RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 RIT2Q99578 217 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 REEP4Q9H6H4 257 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 DHX33Q9H6R0 707 aaKnown RBP3.62□□□□□ -1.83
USP53-205ENST00000509769 THAP1Q9NVV9 213 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 TOR4AQ9NXH8 423 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 IGSF9Q9P2J2 1179 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ARHGAP28Q9P2N2 729 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 HEY2Q9UBP5 337 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MORF4L1Q9UBU8 362 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 CLEC4AQ9UMR7 237 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PCDHB8Q9UN66 801 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PKD1L3Q7Z443 1732 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 FRMPD4Q14CM0 1322 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 MAGEB6P1A0A0J9YX57 407 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 A0A1B0GVI7 797 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 GPR89AB7ZAQ6 455 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 H0Y858 1186 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 M0R2C6 588 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 PGRMC2O15173 223 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 RP2O75695 350 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 CLPXO76031 633 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 UBOX5O94941 541 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 SERPINA3P01011 423 aa3.62□□□□□ -1.83
USP53-205ENST00000509769 ASLP04424 464 aa3.62□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms