RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 AOC1P19801 751 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 IGFBP6P24592 240 aaPredicted RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 HARS2P49590 506 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 KPNA2P52292 529 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 ABCE1P61221 599 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 ASPHQ12797 758 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 KCNA10Q16322 511 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 FAM182AQ5T1J6 154 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 FSTL4Q6MZW2 842 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 CD300LGQ6UXG3 332 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 ZNF598Q86UK7 904 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 ALYREFQ86V81 257 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 TP53INP2Q8IXH6 220 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 NETO2Q8NC67 525 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 STON2Q8WXE9 905 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 C1orf74Q96LT6 269 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 RHOBTB2Q9BYZ6 727 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 RHOJQ9H4E5 214 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 GLOD4Q9HC38 313 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 STOML1Q9UBI4 398 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 TLK1Q9UKI8 766 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 DNAJC16Q9Y2G8 782 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 L3MBTL1Q9Y468 752 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 USP12O75317 370 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 PAGE1O75459 146 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 CIB2O75838 187 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 GSRP00390 522 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 RAP1GDS1P52306 607 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 RABGGTBP53611 331 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 IRX4P78413 519 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 PAN2Q504Q3 1202 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 HSP90AA5PQ58FG0 334 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 MSANTD2Q6P1R3 559 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 C16orf46Q6P387 395 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 PKN3Q6P5Z2 889 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 CLEC14AQ86T13 490 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 RNF180Q86T96 592 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 CNTN4Q8IWV2 1026 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 RTL3Q8N8U3 475 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 STMN2Q93045 179 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 CELF6Q96J87 481 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 VPS39Q96JC1 886 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 C8orf48Q96LL4 319 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 GPR22Q99680 433 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 MIPEPQ99797 713 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 UBE2OQ9C0C9 1292 aaKnown RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 DENND2DQ9H6A0 471 aaPredicted RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 RGS18Q9NS28 235 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 TMLHEQ9NVH6 421 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 TMEM216Q9P0N5 145 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 SLC17A6Q9P2U8 582 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 MARCOQ9UEW3 520 aaPredicted RBP12.19□□□□□ -0.46
NUP54-202ENST00000502850 NEU3Q9UQ49 428 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 SCML2Q9UQR0 700 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 PCDHB12Q9Y5F1 795 aa12.19□□□□□ -0.46
NUP54-202ENST00000502850 MKI67P46013 3256 aaKnown RBP12.18□□□□□ -0.46
NUP54-202ENST00000502850 F8W8V4 182 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 TNFRSF10BO14763 440 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 SYN3O14994 580 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 KITP10721 976 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 COL6A1P12109 1028 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 KCNA4P22459 653 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 PGM1P36871 562 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 MAGEA11P43364 429 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 CACNB2Q08289 660 aaPredicted RBP12.18□□□□□ -0.46
NUP54-202ENST00000502850 TRIM71Q2Q1W2 868 aaKnown RBP12.18□□□□□ -0.46
NUP54-202ENST00000502850 TSNAXIP1Q2TAA8 658 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 CMPK2Q5EBM0 449 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 FSCBQ5H9T9 825 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 CERCAMQ5T4B2 595 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 AFMIDQ63HM1 303 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 CCSAPQ6IQ19 270 aaPredicted RBP12.18□□□□□ -0.46
NUP54-202ENST00000502850 CES3Q6UWW8 571 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 ZCCHC23Q6ZST2 131 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 SLC24A5Q71RS6 500 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 MON1AQ86VX9 555 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 C10orf107Q8IVU9 208 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 ARHGAP12Q8IWW6 846 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP12.18□□□□□ -0.46
NUP54-202ENST00000502850 NSMCE1Q8WV22 266 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 MFSD3Q96ES6 412 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 FCRL2Q96LA5 508 aaPredicted RBP12.18□□□□□ -0.46
NUP54-202ENST00000502850 FAM167BQ9BTA0 163 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 MCMBPQ9BTE3 642 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 CCDC106Q9BWC9 280 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 FSD1LQ9BXM9 530 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 XRN2Q9H0D6 950 aaKnown RBP eCLIP12.18□□□□□ -0.46
NUP54-202ENST00000502850 SIK2Q9H0K1 926 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 ZCWPW1Q9H0M4 648 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 NMRAL1Q9HBL8 299 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 BATF3Q9NR55 127 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 IARS2Q9NSE4 1012 aaKnown RBP12.18□□□□□ -0.46
NUP54-202ENST00000502850 TAS2R1Q9NYW7 299 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 TLR6Q9Y2C9 796 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 SNX10Q9Y5X0 201 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 NUMBLQ9Y6R0 609 aa12.18□□□□□ -0.46
NUP54-202ENST00000502850 KCNU1A8MYU2 1149 aa12.17□□□□□ -0.46
NUP54-202ENST00000502850 B2RBV5 119 aa12.17□□□□□ -0.46
NUP54-202ENST00000502850 E9PAM4 449 aa12.17□□□□□ -0.46
NUP54-202ENST00000502850 TRIM13O60858 407 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms