RNA–Protein interactions for RNA: ENST00000489045.5

COL9A3-213, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 5

Gene COL9A3, Length 838 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-213ENST00000489045 SMAD6O43541 496 aaKnown RBP23.55■■□□□ 1.36
COL9A3-213ENST00000489045 TRIM16O95361 564 aa23.55■■□□□ 1.36
COL9A3-213ENST00000489045 WNT1P04628 370 aa23.55■■□□□ 1.36
COL9A3-213ENST00000489045 PTPN9P43378 593 aa23.55■■□□□ 1.36
COL9A3-213ENST00000489045 GSCP56915 257 aaPredicted RBP23.55■■□□□ 1.36
COL9A3-213ENST00000489045 CNTN1Q12860 1018 aa23.55■■□□□ 1.36
COL9A3-213ENST00000489045 AGBL4Q5VU57 503 aa23.55■■□□□ 1.36
COL9A3-213ENST00000489045 UNQ6494/PRO21346Q6UXR6 183 aa23.55■■□□□ 1.36
COL9A3-213ENST00000489045 PHF13Q86YI8 300 aaPredicted RBP23.55■■□□□ 1.36
COL9A3-213ENST00000489045 AASDHPPTQ9NRN7 309 aa23.55■■□□□ 1.36
COL9A3-213ENST00000489045 PPARGC1AQ9UBK2 798 aaKnown RBP23.55■■□□□ 1.36
COL9A3-213ENST00000489045 WNT9AO14904 365 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 PLRG1O43660 514 aaKnown RBP23.54■■□□□ 1.36
COL9A3-213ENST00000489045 CALB1P05937 261 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 CTSLP07711 333 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 FTH1P19P0C7X4 201 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 KRT3P12035 628 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 CCT8P50990 548 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 CLCN6P51797 869 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 ARL13BQ3SXY8 428 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 C22orf39Q6P5X5 142 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 ZNF783Q6ZMS7 281 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 DBX2Q6ZNG2 339 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 MON1BQ7L1V2 547 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 STRADAQ7RTN6 431 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 DRC7Q8IY82 874 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 CHCHD4Q8N4Q1 142 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 OR2A12Q8NGT7 310 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 BAHD1Q8TBE0 780 aaPredicted RBP23.54■■□□□ 1.36
COL9A3-213ENST00000489045 CCDC114Q96M63 670 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 AGPAT1Q99943 283 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 SPON2Q9BUD6 331 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 SELENOOQ9BVL4 669 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 TMEM121BQ9BXQ6 578 aaPredicted RBP23.54■■□□□ 1.36
COL9A3-213ENST00000489045 NAT10Q9H0A0 1025 aaKnown RBP23.54■■□□□ 1.36
COL9A3-213ENST00000489045 KDM4CQ9H3R0 1056 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 OR12D3Q9UGF7 316 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 KLK13Q9UKR3 277 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 TPX2Q9ULW0 747 aaKnown RBP23.54■■□□□ 1.36
COL9A3-213ENST00000489045 BTBD3Q9Y2F9 522 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 FARP1Q9Y4F1 1045 aaPredicted RBP23.54■■□□□ 1.36
COL9A3-213ENST00000489045 NEUROG3Q9Y4Z2 214 aa23.54■■□□□ 1.36
COL9A3-213ENST00000489045 CBX4O00257 560 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 LATO43561 262 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 PROS1P07225 676 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 CD38P28907 300 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 RFC1P35251 1148 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-213ENST00000489045 ADRA1BP35368 520 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 HDAC4P56524 1084 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 NRG1Q02297 640 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-213ENST00000489045 SUZ12Q15022 739 aaKnown RBP23.53■■□□□ 1.36
COL9A3-213ENST00000489045 MANEALQ5VSG8 457 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 RAB44Q7Z6P3 723 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-213ENST00000489045 GLRX5Q86SX6 157 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 RHBDD1Q8TEB9 315 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 FAM172AQ8WUF8 416 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 CENPIQ92674 756 aaPredicted RBP23.53■■□□□ 1.36
COL9A3-213ENST00000489045 SERAC1Q96JX3 654 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 ATP13A1Q9HD20 1204 aa23.53■■□□□ 1.36
COL9A3-213ENST00000489045 A0A1W2PR77 199 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 GPD1P21695 349 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 CHRNA3P32297 505 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 IL9RQ01113 521 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 GNA12Q03113 381 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 CCDC185Q8N715 623 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 PNPLA1Q8N8W4 532 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 CHST14Q8NCH0 376 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 C3orf20Q8ND61 904 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 GATA6Q92908 595 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 SKA1Q96BD8 255 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 TNKS2Q9H2K2 1166 aa23.52■■□□□ 1.36
COL9A3-213ENST00000489045 PTPRBP23467 1997 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 FAM72CH0Y354 149 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 KPNA3O00505 521 aaPredicted RBP23.51■■□□□ 1.35
COL9A3-213ENST00000489045 TEX33O43247 280 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 ZMPSTE24O75844 475 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 KRT37O76014 449 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 MAT2AP31153 395 aaKnown RBP23.51■■□□□ 1.35
COL9A3-213ENST00000489045 SERPINH1P50454 418 aaKnown RBP23.51■■□□□ 1.35
COL9A3-213ENST00000489045 C1QBPQ07021 282 aaKnown RBP23.51■■□□□ 1.35
COL9A3-213ENST00000489045 PIP5KL1Q5T9C9 394 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 FAM72AQ5TYM5 149 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 FAM72DQ6L9T8 149 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 RETSATQ6NUM9 610 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 RWDD4Q6NW29 188 aaKnown RBP23.51■■□□□ 1.35
COL9A3-213ENST00000489045 WDR59Q6PJI9 974 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 PRPF39Q86UA1 669 aaKnown RBP23.51■■□□□ 1.35
COL9A3-213ENST00000489045 FAM72BQ86X60 149 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 BPIFA3Q9BQP9 254 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 MAGEB5Q9BZ81 275 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 OSBPL2Q9H1P3 480 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 NDFIP2Q9NV92 336 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 ARHGAP20Q9P2F6 1191 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 NEU3Q9UQ49 428 aa23.51■■□□□ 1.35
COL9A3-213ENST00000489045 APOBEC2Q9Y235 224 aaKnown RBP23.51■■□□□ 1.35
COL9A3-213ENST00000489045 ASPMQ8IZT6 3477 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 PCDHGA12O60330 932 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 DFNA5O60443 496 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 FERP16591 822 aa23.5■■□□□ 1.35
COL9A3-213ENST00000489045 TAS2R38P59533 333 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms