RNA–Protein interactions for RNA: ENST00000486227.5

HDAC6-228, Transcript of histone deacetylase 6, humanhuman

TSL 2

Gene HDAC6, Length 4,718 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-228ENST00000486227 PDPK2PQ6A1A2 396 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 SNX27Q96L92 541 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 CPNE1Q99829 537 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 PRKD2Q9BZL6 878 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 CLPBQ9H078 707 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 PRDM16Q9HAZ2 1276 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 SLCO1B3Q9NPD5 702 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 NCKIPSDQ9NZQ3 722 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 SEPT3Q9UH03 358 aa11.2□□□□□ -0.62
HDAC6-228ENST00000486227 IRS2Q9Y4H2 1338 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 SEC24DO94855 1032 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 THRAP10827 490 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 ENPEPQ07075 957 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 NOMO1Q15155 1222 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 STRADAQ7RTN6 431 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 SNX31Q8N9S9 440 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 CCDC126Q96EE4 140 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 SEZ6LQ9BYH1 1024 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 DDX18Q9NVP1 670 aaKnown RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 KCNK4Q9NYG8 393 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 STX18Q9P2W9 335 aaKnown RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 ERI2A8K979 691 aaKnown RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 FGF10O15520 208 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 PHGDHO43175 533 aaKnown RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 DEAF1O75398 565 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 LGR5O75473 907 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 MTA2O94776 668 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 TRIM16O95361 564 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 CSH1P0DML2 217 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 CSH2P0DML3 217 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 CCNB1P14635 433 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 LMO2P25791 158 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 NDUFV1P49821 464 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 HADHBP55084 474 aaKnown RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 PSMD5Q16401 504 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 RNF220Q5VTB9 566 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 SLC24A5Q71RS6 500 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 LRRC8DQ7L1W4 858 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 CSPG4P5Q96PW8 444 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 TSPAN18Q96SJ8 248 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 WWOXQ9NZC7 414 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 TMCO1Q9UM00 188 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 C4BP0C0L5 1744 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 AKAP10O43572 662 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 TRIM13O60858 407 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 CFHP08603 1231 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 LAG3P18627 525 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 ITGALP20701 1170 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 EMC10Q5UCC4 262 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 UGT3A1Q6NUS8 523 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 DSG4Q86SJ6 1040 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 P2RY11Q96G91 374 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 SPATA16Q9BXB7 569 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 ACSS3Q9H6R3 686 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 TRIM45Q9H8W5 580 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 UBA2Q9UBT2 640 aaPredicted RBP11.19□□□□□ -0.62
HDAC6-228ENST00000486227 EFR3BQ9Y2G0 817 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 STXBP5LQ9Y2K9 1186 aa11.19□□□□□ -0.62
HDAC6-228ENST00000486227 BUD23O43709 281 aaKnown RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 CXCL14O95715 111 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 SERPINE1P05121 402 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 ANPEPP15144 967 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 ASPAP45381 313 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 APLP1P51693 650 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 UNC5AQ6ZN44 842 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 C7orf61Q8IZ16 206 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 PLD5Q8N7P1 536 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 ECSITQ9BQ95 431 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 SPG21Q9NZD8 308 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 HMGXB4Q9UGU5 601 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 SRRDQ9UH36 339 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 SYCE1LA8MT33 242 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 AOC2O75106 756 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 PCDH8O95206 1070 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 MPOP05164 745 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 SLC1A6P48664 564 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 NEPROQ6NW34 567 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 BNC2Q6ZN30 1099 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 SLC26A9Q7LBE3 791 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 OTOP2Q7RTS6 562 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 ATAD1Q8NBU5 361 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 WDR60Q8WVS4 1066 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 FCRL2Q96LA5 508 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 GAS2L1Q99501 681 aaPredicted RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 EBNA1BP2Q99848 306 aaKnown RBP11.18□□□□□ -0.62
HDAC6-228ENST00000486227 CORO1BQ9BR76 489 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 YIPF2Q9BWQ6 316 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 IL22Q9GZX6 179 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 SYTL2Q9HCH5 934 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 RIC8BQ9NVN3 520 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 DDHD2O94830 711 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 VCLP18206 1134 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 HDCP19113 662 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 SERPINB10P48595 397 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 CHN2P52757 468 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 CCDC157Q569K6 752 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 TRABD2AQ86V40 505 aa11.18□□□□□ -0.62
HDAC6-228ENST00000486227 TDRD5Q8NAT2 981 aaKnown RBP11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms