RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 KLK6Q92876 244 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 ARRDC3Q96B67 414 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 DCBLD2Q96PD2 775 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 BBC3Q96PG8 261 aaPredicted RBP16.5■□□□□ 0.23
COL7A1-204ENST00000462475 TBCBQ99426 244 aa16.5■□□□□ 0.23
COL7A1-204ENST00000462475 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP16.5■□□□□ 0.23
COL7A1-204ENST00000462475 A0A0D9SEW6 157 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 KPNA3O00505 521 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-204ENST00000462475 SLC31A1O15431 190 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 SMAD6O43541 496 aaKnown RBP16.49■□□□□ 0.23
COL7A1-204ENST00000462475 MAGEC1O60732 1142 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 RNGTTO60942 597 aaKnown RBP16.49■□□□□ 0.23
COL7A1-204ENST00000462475 CDK4P11802 303 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 CHRNA3P32297 505 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 SNX16P57768 344 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 KRT83P78385 493 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 MAN2A1Q16706 1144 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 PROX2Q3B8N5 592 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 ARTNQ5T4W7 220 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 C6orf118Q5T5N4 469 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 DPY19L2P1Q6NXN4 242 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 LINGO4Q6UY18 593 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 ZDHHC17Q8IUH5 632 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 DCAF4L2Q8NA75 395 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 CHST14Q8NCH0 376 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 NT5C3BQ969T7 300 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 C2orf49Q9BVC5 232 aaPredicted RBP16.49■□□□□ 0.23
COL7A1-204ENST00000462475 WDCPQ9H6R7 721 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 CAAP1Q9H8G2 361 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 FZD3Q9NPG1 666 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 RRN3Q9NYV6 651 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 MPP6Q9NZW5 540 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 STAP1Q9ULZ2 295 aa16.49■□□□□ 0.23
COL7A1-204ENST00000462475 A0A1W2PQU0 124 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 TRIM38O00635 465 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 THEGLP0DJG4 465 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 CKMT2P17540 419 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 GLDCP23378 1020 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 CDH5P33151 784 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-204ENST00000462475 DEUP1Q05D60 604 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 C2CD6Q53TS8 623 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 FAM102AQ5T9C2 384 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-204ENST00000462475 SMYD5Q6GMV2 418 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 C22orf39Q6P5X5 142 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 SETD3Q86TU7 594 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-204ENST00000462475 TMEM35BQ8NCS4 154 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 OR7D4Q8NG98 312 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 GRIN3AQ8TCU5 1115 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 PGAP3Q96FM1 320 aaPredicted RBP16.48■□□□□ 0.23
COL7A1-204ENST00000462475 KLHDC7BQ96G42 594 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 CCDC114Q96M63 670 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 TNKS2Q9H2K2 1166 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 FHOD1Q9Y613 1164 aa16.48■□□□□ 0.23
COL7A1-204ENST00000462475 BPTFQ12830 3046 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 IGLV3-10A0A075B6K4 115 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 DRGXA6NNA5 263 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 SIGLEC6O43699 453 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 TLX3O43711 291 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-204ENST00000462475 CYP11B1P15538 503 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 FLT3P36888 993 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 GABRB2P47870 512 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 UBE2HP62256 183 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 SEMG2Q02383 582 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 ILKQ13418 452 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 RAPGEF1Q13905 1077 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 DRAP1Q14919 205 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-204ENST00000462475 TPD52L1Q16890 204 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-204ENST00000462475 ZNF284Q2VY69 593 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 HSP90AA4PQ58FG1 418 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 MIIPQ5JXC2 388 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 TAF3Q5VWG9 929 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 TRNP1Q6NT89 227 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 HORMAD1Q86X24 394 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 XYLT1Q86Y38 959 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 SLC25A45Q8N413 288 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 MLKLQ8NB16 471 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 TMIEQ8NEW7 156 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 PDCL3Q9H2J4 239 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 NDST4Q9H3R1 872 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 UCKL1Q9NWZ5 548 aa16.47■□□□□ 0.23
COL7A1-204ENST00000462475 ZFR2Q9UPR6 939 aaKnown RBP16.47■□□□□ 0.23
COL7A1-204ENST00000462475 FARP1Q9Y4F1 1045 aaPredicted RBP16.47■□□□□ 0.23
COL7A1-204ENST00000462475 KNTC1P50748 2209 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 ENDOD1O94919 500 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 PRNPP04156 253 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 PRKCSHP14314 528 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-204ENST00000462475 ACP1P24666 158 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 ITPKBP27987 946 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 OR1E1P30953 314 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 SCNN1AP37088 669 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 ABCG1P45844 678 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 CLCN6P51797 869 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 BPIFB4P59827 614 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 INSM1Q01101 510 aaPredicted RBP16.46■□□□□ 0.23
COL7A1-204ENST00000462475 KCNMA1Q12791 1236 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 SLC25A52Q3SY17 297 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 VWA3BQ502W6 1294 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 ARSIQ5FYB1 569 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 SEL1L3Q68CR1 1132 aa16.46■□□□□ 0.23
COL7A1-204ENST00000462475 NEK5Q6P3R8 708 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms