RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 TSNARE1Q96NA8 513 aa13.9□□□□□ -0.18
CLK3-203ENST00000454830 CFHR5Q9BXR6 569 aa13.9□□□□□ -0.18
CLK3-203ENST00000454830 TRPC7Q9HCX4 862 aa13.9□□□□□ -0.18
CLK3-203ENST00000454830 PRRC2BQ5JSZ5 2229 aaKnown RBP13.9□□□□□ -0.18
CLK3-203ENST00000454830 F5H5T6 163 aa13.9□□□□□ -0.18
CLK3-203ENST00000454830 AVPR1AP37288 418 aa13.9□□□□□ -0.18
CLK3-203ENST00000454830 ARFIP2P53365 341 aa13.9□□□□□ -0.18
CLK3-203ENST00000454830 TRIP4Q15650 581 aaPredicted RBP13.9□□□□□ -0.18
CLK3-203ENST00000454830 IL31Q6EBC2 164 aa13.9□□□□□ -0.18
CLK3-203ENST00000454830 PPHLN1Q8NEY8 458 aaKnown RBP13.9□□□□□ -0.18
CLK3-203ENST00000454830 ZNF395Q9H8N7 513 aaPredicted RBP13.9□□□□□ -0.18
CLK3-203ENST00000454830 CASS4Q9NQ75 786 aa13.9□□□□□ -0.18
CLK3-203ENST00000454830 C2orf71A6NGG8 1288 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 PSMD3O43242 534 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 TSPAN3O60637 253 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 C1QAP02745 245 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 SPATA31D3P0C874 917 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 SLC10A7Q0GE19 358 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 BTG3Q14201 252 aaPredicted RBP13.9□□□□□ -0.19
CLK3-203ENST00000454830 ATG16L1Q676U5 607 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 SPATA31D4Q6ZUB0 917 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 MARK2Q7KZI7 788 aaKnown RBP13.9□□□□□ -0.19
CLK3-203ENST00000454830 NLRP9Q7RTR0 991 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 DCLK2Q8N568 766 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 RFWD2Q8NHY2 731 aa13.9□□□□□ -0.19
CLK3-203ENST00000454830 ZSCAN18Q8TBC5 510 aaPredicted RBP13.9□□□□□ -0.19
CLK3-203ENST00000454830 DIS3LQ8TF46 1054 aaKnown RBP13.9□□□□□ -0.19
CLK3-203ENST00000454830 UNKQ9C0B0 810 aaKnown RBP13.9□□□□□ -0.19
CLK3-203ENST00000454830 MYO7AQ13402 2215 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 ATP5C1P36542 298 aaKnown RBP13.89□□□□□ -0.19
CLK3-203ENST00000454830 ALDH1A3P47895 512 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 HARS2P49590 506 aaKnown RBP13.89□□□□□ -0.19
CLK3-203ENST00000454830 RENBPP51606 427 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 PGGT1BP53609 377 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 ZNF235Q14590 738 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 DLG2Q15700 870 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 SLC39A5Q6ZMH5 540 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 DENND1CQ8IV53 801 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 ARID3BQ8IVW6 561 aaPredicted RBP13.89□□□□□ -0.19
CLK3-203ENST00000454830 SCYL1Q96KG9 808 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 RILPQ96NA2 401 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 GORASP1Q9BQQ3 440 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 ZNF358Q9NW07 568 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 DONSONQ9NYP3 566 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 ZBBXA8MT70 800 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 FSBPO95073 299 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 RHOQP17081 205 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 CNTFP26441 200 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 PSEN1P49768 467 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 WNT3AP56704 352 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 BST1Q10588 318 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 STEAP4Q687X5 459 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 CPNE1Q99829 537 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 MYLK2Q9H1R3 596 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 TRIM33Q9UPN9 1127 aa13.89□□□□□ -0.19
CLK3-203ENST00000454830 MKI67P46013 3256 aaKnown RBP13.89□□□□□ -0.19
CLK3-203ENST00000454830 ATXN2Q99700 1313 aaKnown RBP13.89□□□□□ -0.19
CLK3-203ENST00000454830 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 HMX2A2RU54 273 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 TUFMP49411 452 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 DSC2Q02487 901 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 CTBP1Q13363 440 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 CNGA3Q16281 694 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 TRIM42Q8IWZ5 723 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 GBP7Q8N8V2 638 aaPredicted RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 RXFP1Q9HBX9 757 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 GKN1Q9NS71 199 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 CLIC5Q9NZA1 410 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 CPSF2Q9P2I0 782 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 ZFP69BQ9UJL9 534 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 TLK1Q9UKI8 766 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 DCTN3O75935 186 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 ALDOAP04075 364 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 TARSP26639 723 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 MRPL58Q14197 206 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 USP10Q14694 798 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 MTDHQ86UE4 582 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 OR6P1Q8NGX9 317 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 SLC40A1Q9NP59 571 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 MTO1Q9Y2Z2 717 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 USP1O94782 785 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 GJB5O95377 273 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 ATF6P18850 670 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 ACVRL1P37023 503 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 NIPAL4Q0D2K0 466 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 STX3Q13277 289 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 PDE1CQ14123 709 aaPredicted RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 FASTKD1Q53R41 847 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 ESRP1Q6NXG1 681 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 MSANTD2Q6P1R3 559 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 TNS4Q8IZW8 715 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 GPATCH11Q8N954 259 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 TSGA13Q96PP4 275 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 SNX15Q9NRS6 342 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 TRPM5Q9NZQ8 1165 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 DNMT3LQ9UJW3 386 aa13.88□□□□□ -0.19
CLK3-203ENST00000454830 FNDC3AQ9Y2H6 1198 aaKnown RBP13.88□□□□□ -0.19
CLK3-203ENST00000454830 MAGEB16A2A368 324 aa13.87□□□□□ -0.19
CLK3-203ENST00000454830 PHGDHO43175 533 aaKnown RBP13.87□□□□□ -0.19
CLK3-203ENST00000454830 GLRA3O75311 464 aa13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms