RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 TCP11X2Q5H9J9 407 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 FAM102AQ5T9C2 384 aaPredicted RBP7.25□□□□□ -1.25
VPS41-208ENST00000448833 KLHDC7AQ5VTJ3 777 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 TRIM72Q6ZMU5 477 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 CACTIN-AS1Q8N1I8 211 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 DCAF4L2Q8NA75 395 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 ANKRD20A12PQ8NF67 263 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 SAP25Q8TEE9 199 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 MYEOVQ96EZ4 313 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 ALG14Q96F25 216 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 IFT43Q96FT9 208 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 KLHDC7BQ96G42 594 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 LRIG1Q96JA1 1093 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 CNDP2Q96KP4 475 aaKnown RBP7.25□□□□□ -1.25
VPS41-208ENST00000448833 SLC6A18Q96N87 628 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 CEP44Q9C0F1 390 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 NUP62CLQ9H1M0 184 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 CLSTN2Q9H4D0 955 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 SIX2Q9NPC8 291 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 PLCB1Q9NQ66 1216 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 PIGVQ9NUD9 493 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 TOR4AQ9NXH8 423 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 DONSONQ9NYP3 566 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 PPARGC1AQ9UBK2 798 aaKnown RBP7.25□□□□□ -1.25
VPS41-208ENST00000448833 SERGEFQ9UGK8 458 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 HPCAL4Q9UM19 191 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 LHX6Q9UPM6 363 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 BTBD3Q9Y2F9 522 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 OR51B4Q9Y5P0 310 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 CHD5Q8TDI0 1954 aa7.25□□□□□ -1.25
VPS41-208ENST00000448833 IGLV3-10A0A075B6K4 115 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 TRABD2BA6NFA1 517 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 KPNA3O00505 521 aaPredicted RBP7.24□□□□□ -1.25
VPS41-208ENST00000448833 KCNK3O14649 394 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 RTN2O75298 545 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 RFPL3O75679 317 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 ADCY5O95622 1261 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 CCDC172P0C7W6 258 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 ALPPL2P10696 532 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 SRCP12931 536 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 CKMT2P17540 419 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 AKT2P31751 481 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 CHRNA3P32297 505 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 MLLT3P42568 568 aaPredicted RBP7.24□□□□□ -1.25
VPS41-208ENST00000448833 RPS21P63220 83 aaKnown RBP7.24□□□□□ -1.25
VPS41-208ENST00000448833 PITX1P78337 314 aaPredicted RBP7.24□□□□□ -1.25
VPS41-208ENST00000448833 CENPCQ03188 943 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 CNTN1Q12860 1018 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 SYCP1Q15431 976 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 PTPN20Q4JDL3 420 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 MIIPQ5JXC2 388 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 FKBP15Q5T1M5 1219 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 Q6ZVU0 165 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 CIR1Q86X95 450 aaPredicted RBP7.24□□□□□ -1.25
VPS41-208ENST00000448833 PCDH20Q8N6Y1 951 aaKnown RBP7.24□□□□□ -1.25
VPS41-208ENST00000448833 RAB7BQ96AH8 199 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 ISG20Q96AZ6 181 aaKnown RBP7.24□□□□□ -1.25
VPS41-208ENST00000448833 NXPE2Q96DL1 559 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 ARHGEF26Q96DR7 871 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 FEM1CQ96JP0 617 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 HDAC8Q9BY41 377 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 ZYG11BQ9C0D3 744 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 NCKIPSDQ9NZQ3 722 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 ARHGAP20Q9P2F6 1191 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 IL36AQ9UHA7 158 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 ACACAQ13085 2346 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 IGF2RP11717 2491 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 SHROOM3Q8TF72 1996 aa7.24□□□□□ -1.25
VPS41-208ENST00000448833 ARID1BQ8NFD5 2236 aaPredicted RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 ANKRD62A6NC57 917 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 ZSCAN5CA6NGD5 496 aaPredicted RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 CBX4O00257 560 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 BNIP3LO60238 219 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 SRGAP2O75044 1071 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 ENDOD1O94919 500 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 PCDH8O95206 1070 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 WNT1P04628 370 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 VAV1P15498 845 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 HNRNPA2B1P22626 353 aaKnown RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 EPHA8P29322 1005 aaPredicted RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 SDC4P31431 198 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 MAPKAPK2P49137 400 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 DUSP3P51452 185 aaPredicted RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 IL9RQ01113 521 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 NRG1Q02297 640 aaPredicted RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 APBA1Q02410 837 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 RAD51Q06609 339 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 SGCGQ13326 291 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 ZNF211Q13398 564 aaPredicted RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 POLD3Q15054 466 aaPredicted RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 DPCR1Q3MIW9 517 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 CCDC157Q569K6 752 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 KCNT1Q5JUK3 1230 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 AGBL4Q5VU57 503 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 KIAA1161Q6NSJ0 714 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 PPP1R2P3Q6NXS1 205 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 FBXL19Q6PCT2 694 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 DHRS13Q6UX07 377 aa7.23□□□□□ -1.25
VPS41-208ENST00000448833 ERN2Q76MJ5 926 aaKnown RBP7.23□□□□□ -1.25
VPS41-208ENST00000448833 STRADAQ7RTN6 431 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms