RNA–Protein interactions for RNA: ENST00000430118.1

HMGB3-203, Transcript of high mobility group box 3, humanhuman

TSL 1 (best)

Gene HMGB3, Length 529 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-203ENST00000430118 NACC2Q96BF6 587 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 TRIM44Q96DX7 344 aaPredicted RBP4.42□□□□□ -1.7
HMGB3-203ENST00000430118 ZNF333Q96JL9 665 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 CD180Q99467 661 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 SDF4Q9BRK5 362 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 PHF7Q9BWX1 381 aaPredicted RBP4.42□□□□□ -1.7
HMGB3-203ENST00000430118 RNF26Q9BY78 433 aaPredicted RBP4.42□□□□□ -1.7
HMGB3-203ENST00000430118 ALOXE3Q9BYJ1 711 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 INTS2Q9H0H0 1204 aaKnown RBP4.42□□□□□ -1.7
HMGB3-203ENST00000430118 PNNQ9H307 717 aaKnown RBP4.42□□□□□ -1.7
HMGB3-203ENST00000430118 STN1Q9H668 368 aaKnown RBP4.42□□□□□ -1.7
HMGB3-203ENST00000430118 SYNCQ9H7C4 482 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 DIAPH3Q9NSV4 1193 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 SLC25A10Q9UBX3 287 aaPredicted RBP4.42□□□□□ -1.7
HMGB3-203ENST00000430118 VPS28Q9UK41 221 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 OSGIN2Q9Y236 505 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 ZNF536O15090 1300 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 MAP3K15Q6ZN16 1313 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 KDM3AQ9Y4C1 1321 aa4.42□□□□□ -1.7
HMGB3-203ENST00000430118 HTTP42858 3142 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 SIPA1L3O60292 1781 aaPredicted RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 AHRRA9YTQ3 701 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 H3BNC9 293 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 GTPBP1O00178 669 aaKnown RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 PEX12O00623 359 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 PPM1DO15297 605 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 DHX16O60231 1041 aaKnown RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 ECE2O60344 883 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 PTP4A3O75365 173 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 PMPCBO75439 489 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 SCAF4O95104 1147 aaKnown RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 METTL18O95568 372 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 LMNAP02545 664 aaKnown RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 HMOX1P09601 288 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 WEE2P0C1S8 567 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 GATA3P23771 443 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 EPHA8P29322 1005 aaPredicted RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 HOXD13P35453 343 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 BSGP35613 385 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 LIPAP38571 399 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 SCNN1GP51170 649 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 RARSP54136 660 aaKnown RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 PRMT2P55345 433 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 SP3Q02447 781 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 GRAPQ13588 217 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 NFIL3Q16649 462 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 BEAN1Q3B7T3 259 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 HSP90AB3PQ58FF7 597 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 RABL3Q5HYI8 236 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 SNX30Q5VWJ9 437 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 GLB1LQ6UWU2 654 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 Q6ZSN1 163 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 TMPRSS6Q8IU80 811 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 APOBEC3FQ8IUX4 373 aaKnown RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 C11orf44Q8N8P7 122 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 AGBL3Q8NEM8 1001 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 TNIP2Q8NFZ5 429 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 LINS1Q8NG48 757 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 RFWD2Q8NHY2 731 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 RP9Q8TA86 221 aaKnown RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 ETNPPLQ8TBG4 499 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 GRAPLQ8TC17 118 aaPredicted RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 GLG1Q92896 1179 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 CUL5Q93034 780 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 CTHRC1Q96CG8 243 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 RNF31Q96EP0 1072 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 MCRS1Q96EZ8 462 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 WDYHV1Q96HA8 205 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 PGBD1Q96JS3 809 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 CINPQ9BW66 212 aaPredicted RBP4.41□□□□□ -1.7
HMGB3-203ENST00000430118 GHITMQ9H3K2 345 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 MUC13Q9H3R2 512 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 VEZTQ9HBM0 779 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 PDE11AQ9HCR9 933 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 ANKEF1Q9NU02 776 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 TMEM51Q9NW97 253 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 MYO3BQ8WXR4 1341 aa4.41□□□□□ -1.7
HMGB3-203ENST00000430118 CEMIPQ8WUJ3 1361 aa4.4□□□□□ -1.7
HMGB3-203ENST00000430118 COL6A3P12111 3177 aa4.4□□□□□ -1.7
HMGB3-203ENST00000430118 CCDC187A0A096LP49 1063 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 SH2D7A6NKC9 451 aaPredicted RBP4.4□□□□□ -1.71
HMGB3-203ENST00000430118 YDJCA8MPS7 323 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 CCER2I3L3R5 266 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 DOK2O60496 412 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 LPXNO60711 386 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 TSPAN9O75954 239 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 ALDOAP04075 364 aaKnown RBP4.4□□□□□ -1.71
HMGB3-203ENST00000430118 PPP3CBP16298 524 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 ZNF37AP17032 561 aaPredicted RBP4.4□□□□□ -1.71
HMGB3-203ENST00000430118 ACO1P21399 889 aaKnown RBP4.4□□□□□ -1.71
HMGB3-203ENST00000430118 DDX6P26196 483 aaKnown RBP eCLIP4.4□□□□□ -1.71
HMGB3-203ENST00000430118 DUSP1P28562 367 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 HIBADHP31937 336 aaKnown RBP4.4□□□□□ -1.71
HMGB3-203ENST00000430118 CNR2P34972 360 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 IGHMBP2P38935 993 aaKnown RBP4.4□□□□□ -1.71
HMGB3-203ENST00000430118 TPTEP56180 551 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 FOXL2P58012 376 aa4.4□□□□□ -1.71
HMGB3-203ENST00000430118 FAM3BP58499 235 aaPredicted RBP4.4□□□□□ -1.71
HMGB3-203ENST00000430118 IRX3P78415 501 aaPredicted RBP4.4□□□□□ -1.71
HMGB3-203ENST00000430118 TXNL4AP83876 142 aaKnown RBP4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms