RNA–Protein interactions for RNA: ENST00000359984.12

CLN3-205, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 1,876 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-205ENST00000359984 FOSL2P15408 326 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 LMAN2Q12907 356 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 HNRNPDQ14103 355 aaKnown RBP20.3■□□□□ 0.84
CLN3-205ENST00000359984 SKIV2LQ15477 1246 aaKnown RBP20.3■□□□□ 0.84
CLN3-205ENST00000359984 RNASEH2BQ5TBB1 312 aaKnown RBP20.3■□□□□ 0.84
CLN3-205ENST00000359984 FAXCQ5TGI0 409 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 HIBCHQ6NVY1 386 aaPredicted RBP20.3■□□□□ 0.84
CLN3-205ENST00000359984 DEFB123Q8N688 67 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 BBOF1Q8ND07 529 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 PPM1EQ8WY54 764 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 FGF14Q92915 247 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 LMLNQ96KR4 655 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 EBF3Q9H4W6 596 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 ETNK1Q9HBU6 452 aa20.3■□□□□ 0.84
CLN3-205ENST00000359984 KIAA1522Q9P206 1035 aaPredicted RBP20.3■□□□□ 0.84
CLN3-205ENST00000359984 CD70P32970 193 aa20.29■□□□□ 0.84
CLN3-205ENST00000359984 CD68P34810 354 aaPredicted RBP20.29■□□□□ 0.84
CLN3-205ENST00000359984 BASP1P80723 227 aaKnown RBP20.29■□□□□ 0.84
CLN3-205ENST00000359984 FCHO2Q0JRZ9 810 aa20.29■□□□□ 0.84
CLN3-205ENST00000359984 ASTLQ6HA08 431 aaPredicted RBP20.29■□□□□ 0.84
CLN3-205ENST00000359984 CPT1BQ92523 772 aa20.29■□□□□ 0.84
CLN3-205ENST00000359984 RBM22Q9NW64 420 aaKnown RBP eCLIP20.29■□□□□ 0.84
CLN3-205ENST00000359984 EPS15L1Q9UBC2 864 aa20.29■□□□□ 0.84
CLN3-205ENST00000359984 VPS28Q9UK41 221 aa20.29■□□□□ 0.84
CLN3-205ENST00000359984 HPCAL4Q9UM19 191 aa20.29■□□□□ 0.84
CLN3-205ENST00000359984 FARP1Q9Y4F1 1045 aaPredicted RBP20.29■□□□□ 0.84
CLN3-205ENST00000359984 MYOFQ9NZM1 2061 aa20.29■□□□□ 0.84
CLN3-205ENST00000359984 CCDC151A5D8V7 595 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 CBX4O00257 560 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 SP100P23497 879 aaPredicted RBP20.28■□□□□ 0.84
CLN3-205ENST00000359984 RENBPP51606 427 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 SLC10A7Q0GE19 358 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 GRM2Q14416 872 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 PDGFRLQ15198 375 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 HABP4Q5JVS0 413 aaKnown RBP20.28■□□□□ 0.84
CLN3-205ENST00000359984 ANKRD22Q5VYY1 191 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 OTOP3Q7RTS5 596 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 APCDD1Q8J025 514 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 TEX26Q8N6G2 289 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 ATP2A3Q93084 1043 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 RPP25Q9BUL9 199 aaKnown RBP20.28■□□□□ 0.84
CLN3-205ENST00000359984 FAM53CQ9NYF3 392 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 IGSF9Q9P2J2 1179 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 F5H423 210 aaPredicted RBP20.28■□□□□ 0.84
CLN3-205ENST00000359984 MBTPS2O43462 519 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 SNAP91O60641 907 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 ZMPSTE24O75844 475 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 NFATC1O95644 943 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 FAM153BP0C7A2 387 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 ADH5P11766 374 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 PSMB4P28070 264 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 HLA-FP30511 346 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 SMAD4Q13485 552 aaKnown RBP20.28■□□□□ 0.84
CLN3-205ENST00000359984 PARP6Q2NL67 630 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 FAM153CQ494X1 144 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 MARC1Q5VT66 337 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 PCGF5Q86SE9 256 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 PPIL6Q8IXY8 311 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 NSMCE1Q8WV22 266 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 FAM129AQ9BZQ8 928 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 HPS4Q9NQG7 708 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 ABCB8Q9NUT2 735 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 ARGLU1Q9NWB6 273 aaPredicted RBP20.28■□□□□ 0.84
CLN3-205ENST00000359984 FAM153AQ9UHL3 310 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 INTS6Q9UL03 887 aaKnown RBP20.28■□□□□ 0.84
CLN3-205ENST00000359984 ACTL7AQ9Y615 435 aa20.28■□□□□ 0.84
CLN3-205ENST00000359984 TCRBV7S3A2A0A539 114 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 OTOL1A6NHN0 477 aaPredicted RBP20.27■□□□□ 0.84
CLN3-205ENST00000359984 HOXC11O43248 304 aaPredicted RBP20.27■□□□□ 0.84
CLN3-205ENST00000359984 ECI2O75521 394 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 ADH1CP00326 375 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 HLA-DQB2P05538 268 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 PSMC3P17980 439 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 PLK1P53350 603 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 CAV1Q03135 178 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 GAD2Q05329 585 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 TNK2Q07912 1038 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 MORF4L2Q15014 288 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 SYCP2LQ5T4T6 812 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 TMCO4Q5TGY1 634 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 YAF2Q8IY57 180 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 NAT16Q8N8M0 369 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 NAT8LQ8N9F0 302 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 DCAF4L2Q8NA75 395 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 ZNF599Q96NL3 588 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 GBA3Q9H227 469 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 RSPH14Q9UHP6 348 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 EYSQ5T1H1 3165 aa20.27■□□□□ 0.84
CLN3-205ENST00000359984 NFKB1P19838 968 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 FDFT1P37268 417 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 ARF5P84085 180 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 SEMA5AQ13591 1074 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 SLC12A1Q13621 1099 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 KCNJ11Q14654 390 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 LBRQ14739 615 aaKnown RBP20.26■□□□□ 0.83
CLN3-205ENST00000359984 PLEKHG6Q3KR16 790 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 ITPRIPL1Q6GPH6 555 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 MTSS1LQ765P7 747 aa20.26■□□□□ 0.83
CLN3-205ENST00000359984 AENQ8WTP8 325 aaKnown RBP20.26■□□□□ 0.83
CLN3-205ENST00000359984 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP20.26■□□□□ 0.835e-8■■■■■ 65.3
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms