RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 FOXO4P98177 505 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 TGM3Q08188 693 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 PTGES3Q15185 160 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SPATA19Q7Z5L4 167 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CHPFQ8IZ52 775 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 FSTL5Q8N475 847 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 MARVELD2Q8N4S9 558 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 BAP1Q92560 729 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 UNC93B1Q9H1C4 597 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SH3BP4Q9P0V3 963 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 PCDHGB6Q9Y5F9 930 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SH3PXD2BA1X283 911 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ULK1O75385 1050 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CYP11B1P15538 503 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 FAUP35544 74 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 CAPGP40121 348 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 AP2S1P53680 142 aaPredicted RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 POU4F1Q01851 419 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 SMARCB1Q12824 385 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 EIF5AL1Q6IS14 154 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 BHLHB9Q6PI77 547 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF767PQ75MW2 155 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 KSR1Q8IVT5 923 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 IQCF2Q8IXL9 164 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 ATL1Q8WXF7 558 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 MYLPFQ96A32 169 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 MYO19Q96H55 970 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 PIGSQ96S52 555 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 MRI1Q9BV20 369 aa5.32□□□□□ -1.56
SCN1A-201ENST00000303395 AGO2Q9UKV8 859 aaKnown RBP5.32□□□□□ -1.56
SCN1A-201ENST00000303395 DNAJB6O75190 326 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 VPS26AO75436 327 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 H6PDO95479 791 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF23P17027 643 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CD40LGP29965 261 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 YWHABP31946 246 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SCNN1BP51168 640 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TRAF3Q13114 568 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ARHGEF7Q14155 803 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 FAM47AQ5JRC9 791 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CCNYL2Q5T2Q4 361 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ZCCHC8Q6NZY4 707 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SLC44A2Q8IWA5 706 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 C7orf31Q8N865 590 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TTC29Q8NA56 475 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 FAM13CQ8NE31 585 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 KCNS3Q9BQ31 491 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TMEM134Q9H6X4 195 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 S100A14Q9HCY8 104 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 MAN2B2Q9Y2E5 1009 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 KLHL20Q9Y2M5 609 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SNAP23O00161 211 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CYP27B1O15528 508 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CHST10O43529 356 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 NPHS1O60500 1241 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 RPS7P62081 194 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 GALNT1Q10472 559 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 PLD1Q13393 1074 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ATP1A4Q13733 1029 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CLCA4Q14CN2 919 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 DDR2Q16832 855 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 BTBD8Q5XKL5 378 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SNRNP48Q6IEG0 339 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 DSTYKQ6XUX3 929 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TIFABQ6ZNK6 161 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 PJA1Q8NG27 643 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SLC45A3Q96JT2 553 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 HSFY1Q96LI6 401 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 C8orf37Q96NL8 207 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CD248Q9HCU0 757 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 JPH1Q9HDC5 661 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ZNF70Q9UC06 446 aaPredicted RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ASB4Q9Y574 426 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 A0A0X1KG70 313 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ESYT3A0FGR9 886 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 RRN3P2A6NIE6 340 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 MYO1GB0I1T2 1018 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 HUS1O60921 280 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 CAND2O75155 1236 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 PTTG1O95997 202 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ITGA2BP08514 1039 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 EPB42P16452 691 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ITGA3P26006 1051 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SOAT1P35610 550 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TRIQKQ629K1 86 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 FBXO33Q7Z6M2 555 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SLC44A5Q8NCS7 719 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 PROX1Q92786 737 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TESCQ96BS2 214 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 NSUN4Q96CB9 384 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 REXO5Q96IC2 774 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ITCHQ96J02 903 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 PPP3R2Q96LZ3 170 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 EIF2AK1Q9BQI3 630 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ARHGEF38Q9NXL2 777 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 TAS2R13Q9NYV9 303 aa5.31□□□□□ -1.56
SCN1A-201ENST00000303395 SAMD4AQ9UPU9 718 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 ZC3H4Q9UPT8 1303 aaKnown RBP5.31□□□□□ -1.56
SCN1A-201ENST00000303395 USP54Q70EL1 1684 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms