RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 XIAPP98170 497 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 MPP2Q14168 576 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 FNBP1LQ5T0N5 605 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 CHADLQ6NUI6 762 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 KCNMB4Q86W47 210 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 MIER2Q8N344 545 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 CPT1BQ92523 772 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 NSMCE2Q96MF7 247 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 CIB1Q99828 191 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 C9orf16Q9BUW7 83 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 HMG20AQ9NP66 347 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 SLC38A7Q9NVC3 462 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 FAM8A1Q9UBU6 413 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 HDAC3O15379 428 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 FCGR1AP12314 374 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 GRTP1Q5TC63 336 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 CCDC80Q76M96 950 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 ZC3H3Q8IXZ2 948 aaKnown RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 ABHD8Q96I13 439 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 BDH2Q9BUT1 245 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 VTI1BQ9UEU0 232 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 TSPAN16Q9UKR8 245 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 CAB39Q9Y376 341 aaPredicted RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 VAPBO95292 243 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 ASS1P00966 412 aaKnown RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 C4BPAP04003 597 aaKnown RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 PNPLA4P41247 253 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 KLF10Q13118 480 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 CCDC126Q96EE4 140 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 KCTD14Q9BQ13 255 aaPredicted RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 RIC8BQ9NVN3 520 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 PPM1HQ9ULR3 514 aa15.6■□□□□ 0.09
SHH-201ENST00000297261 BARX2Q9UMQ3 279 aaPredicted RBP15.6■□□□□ 0.09
SHH-201ENST00000297261 SIN3BO75182 1162 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 CST3P01034 146 aaPredicted RBP15.59■□□□□ 0.09
SHH-201ENST00000297261 ZBTB48P10074 688 aaPredicted RBP15.59■□□□□ 0.09
SHH-201ENST00000297261 PGAM1P18669 254 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 PIK3R1P27986 724 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 TMEM63BQ5T3F8 832 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 ADGRD1Q6QNK2 874 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 SLC25A23Q9BV35 468 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 C6orf62Q9GZU0 229 aaPredicted RBP15.59■□□□□ 0.09
SHH-201ENST00000297261 NMRK2Q9NPI5 230 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 PNPLA3Q9NST1 481 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 SYBUQ9NX95 663 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 NDUFAF1Q9Y375 327 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 ATP6AP2A0A1C7CYW4 349 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 ASNA1O43681 348 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 ATP6AP2O75787 350 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 RECQL4O94761 1208 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 MMP3P08254 477 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 FBXO47Q5MNV8 452 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 CXCL17Q6UXB2 119 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 LRRC8DQ7L1W4 858 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 SAPCD2Q86UD0 394 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 TAGAPQ8N103 731 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 GLT1D1Q96MS3 346 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 FIZ1Q96SL8 496 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 TGDSO95455 350 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 MRPL28Q13084 256 aaKnown RBP15.59■□□□□ 0.09
SHH-201ENST00000297261 ATP6AP1LQ52LC2 224 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 KIAA1841Q6NSI8 718 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 UNC5AQ6ZN44 842 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 LINC00523Q86TU6 105 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 OR8H2Q8N162 312 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 C12orf50Q8NA57 414 aaPredicted RBP15.59■□□□□ 0.09
SHH-201ENST00000297261 C1orf50Q9BV19 199 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 CLK4Q9HAZ1 481 aaKnown RBP15.59■□□□□ 0.09
SHH-201ENST00000297261 PTTG2Q9NZH5 202 aa15.59■□□□□ 0.09
SHH-201ENST00000297261 E5RJQ4 531 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 MPOP05164 745 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 TTKP33981 857 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 ACTR3P61158 418 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 SLC39A4Q6P5W5 647 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 HORMAD1Q86X24 394 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 URGCPQ8TCY9 931 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 PLEKHO2Q8TD55 490 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 CPNE1Q99829 537 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 EBNA1BP2Q99848 306 aaKnown RBP15.58■□□□□ 0.09
SHH-201ENST00000297261 OMDQ99983 421 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 ATXN3LQ9H3M9 355 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 TRNAU1APQ9NX07 287 aaKnown RBP15.58■□□□□ 0.09
SHH-201ENST00000297261 ADAMTS5Q9UNA0 930 aa15.58■□□□□ 0.09
SHH-201ENST00000297261 C11orf97A0A1B0GVM6 126 aaPredicted RBP15.58■□□□□ 0.08
SHH-201ENST00000297261 ERI2A8K979 691 aaKnown RBP15.58■□□□□ 0.08
SHH-201ENST00000297261 PGK1P00558 417 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 SMPD1P17405 629 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 ACADSBP45954 432 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 POU4F1Q01851 419 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 PAN2Q504Q3 1202 aaKnown RBP15.58■□□□□ 0.08
SHH-201ENST00000297261 MTX3Q5HYI7 312 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 RORBQ92753 470 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 TIMMDC1Q9NPL8 285 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 LATS2Q9NRM7 1088 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 DNAAF2Q9NVR5 837 aaKnown RBP15.58■□□□□ 0.08
SHH-201ENST00000297261 KIAA1257Q9ULG3 409 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 TAF4O00268 1085 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 HSMCR30P0CW71 290 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 RAD23AP54725 363 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 SPIDRQ14159 915 aa15.58■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 403.1 ms