RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 PARP15Q460N3 678 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 LRRC8BQ6P9F7 803 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 C3orf62Q6ZUJ4 267 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 RTL10Q7L3V2 364 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 ZNF354CQ86Y25 554 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 TLCD1Q96CP7 247 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 PGM2Q96G03 612 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 PKNOX2Q96KN3 472 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 SIGLEC10Q96LC7 697 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 DDX50Q9BQ39 737 aaKnown RBP17.22■□□□□ 0.35
CLN3-252ENST00000636907 CCDC77Q9BR77 488 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 RETREG1Q9H6L5 497 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 CERS4Q9HA82 394 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 SP110Q9HB58 689 aa17.22■□□□□ 0.35
CLN3-252ENST00000636907 RBM22Q9NW64 420 aaKnown RBP eCLIP17.22■□□□□ 0.35
CLN3-252ENST00000636907 TRAV19A0A0A6YYK7 116 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 PER2O15055 1255 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 RGS16O15492 202 aaPredicted RBP17.21■□□□□ 0.35
CLN3-252ENST00000636907 SUN1O94901 812 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 C1RP00736 705 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 HLA-DQB2P05538 268 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 IVLP07476 585 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 TSHRP16473 764 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 ACVRL1P37023 503 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 EPHA5P54756 1037 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 OLIG2Q13516 323 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 KCTD11Q693B1 232 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 Q6ZNB5 142 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 MPP5Q8N3R9 675 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 FATE1Q969F0 183 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 LRRC39Q96DD0 335 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 CFAP36Q96G28 342 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 OXNAD1Q96HP4 312 aaPredicted RBP17.21■□□□□ 0.35
CLN3-252ENST00000636907 ABHD8Q96I13 439 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 GLOD4Q9HC38 313 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 PIH1D1Q9NWS0 290 aaKnown RBP17.21■□□□□ 0.35
CLN3-252ENST00000636907 DNMT3BQ9UBC3 853 aaKnown RBP17.21■□□□□ 0.35
CLN3-252ENST00000636907 CTNNAL1Q9UBT7 734 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 RABGEF1Q9UJ41 708 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 TTLL3Q9Y4R7 772 aa17.21■□□□□ 0.35
CLN3-252ENST00000636907 EXOC1LA0A1B0GW35 172 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 ERI2A8K979 691 aaKnown RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 CLDN11O75508 207 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 SERINC3Q13530 473 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 HNRNPDQ14103 355 aaKnown RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 PRPSAP1Q14558 356 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 PDE12Q6L8Q7 609 aaKnown RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 CHST9Q7L1S5 443 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP17.2■□□□□ 0.34
CLN3-252ENST00000636907 OR52K2Q8NGK3 314 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 SHKBP1Q8TBC3 707 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 FBF1Q8TES7 1133 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 ARHGEF2Q92974 986 aaKnown RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 TCEAL4Q96EI5 215 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 FCRL5Q96RD9 977 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 SLC46A2Q9BY10 475 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 ZC3H7BQ9UGR2 993 aaKnown RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 ADAM21Q9UKJ8 722 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 CHD9Q3L8U1 2897 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 CHD7Q9P2D1 2997 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 A0A0D9SEW6 157 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 USP12O75317 370 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 CPP00450 1065 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 PTPN2P17706 415 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 GCAP28676 217 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 HOXA9P31269 272 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 SESN2P58004 480 aaPredicted RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 MAGOHP61326 146 aaKnown RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 TNFAIP8L3Q5GJ75 292 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 KLHDC8BQ8IXV7 354 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 TTC16Q8NEE8 873 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 OR52K1Q8NGK4 314 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 PABPC5Q96DU9 382 aaKnown RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 EBNA1BP2Q99848 306 aaKnown RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 PLAC1Q9HBJ0 212 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 UBP1Q9NZI7 540 aa17.2■□□□□ 0.34
CLN3-252ENST00000636907 LSM7Q9UK45 103 aaKnown RBP17.2■□□□□ 0.34
CLN3-252ENST00000636907 A0A1B0GVM2 712 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 TCAF2A6NFQ2 919 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 CCDC85CA6NKD9 419 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 POC1B-GALNT4F8VUJ3 575 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 MOSPD3O75425 235 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 NEBLO76041 1014 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 AGTP01019 485 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 HNRNPA1P09651 372 aaKnown RBP eCLIP17.19■□□□□ 0.34
CLN3-252ENST00000636907 NR1D1P20393 614 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 MGAT1P26572 445 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 MMP13P45452 471 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 IFNAR2P48551 515 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 NUMBP49757 651 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 GNA12Q03113 381 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 IL10RBQ08334 325 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 SLC10A7Q0GE19 358 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 EFTUD2Q15029 972 aaKnown RBP eCLIP17.19■□□□□ 0.346e-10■■■■□ 26.2
CLN3-252ENST00000636907 GPR158Q5T848 1215 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 ADGRD2Q7Z7M1 963 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 RBM23Q86U06 439 aaKnown RBP17.19■□□□□ 0.34
CLN3-252ENST00000636907 OR7D4Q8NG98 312 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 SPATA22Q8NHS9 363 aa17.19■□□□□ 0.34
CLN3-252ENST00000636907 XPO6Q96QU8 1125 aaKnown RBP17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms