RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 PTPN20Q4JDL3 420 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 AGBL4Q5VU57 503 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 PDZD3Q86UT5 571 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 IQCHQ86VS3 1027 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 TRIM69Q86WT6 500 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 SIX2Q9NPC8 291 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 VPS28Q9UK41 221 aa24.58■■□□□ 1.53
LSM4-202ENST00000593564 AJAP1Q9UKB5 411 aaPredicted RBP24.58■■□□□ 1.53
LSM4-202ENST00000593564 M0QYT0 321 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 CBX4O00257 560 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 RFPL3O75679 317 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 KRT9P35527 623 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 GGCXP38435 758 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 CDH4P55283 916 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 CNTN1Q12860 1018 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 OVGP1Q12889 678 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 OTUD1Q5VV17 481 aaPredicted RBP24.57■■□□□ 1.52
LSM4-202ENST00000593564 Q6ZVU0 165 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 C14orf80Q86SX3 495 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 SH2D3CQ8N5H7 860 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 EID2Q8N6I1 236 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 PIP4K2CQ8TBX8 421 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 SYNCQ9H7C4 482 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 RRN3Q9NYV6 651 aa24.57■■□□□ 1.52
LSM4-202ENST00000593564 MAT2AP31153 395 aaKnown RBP24.56■■□□□ 1.52
LSM4-202ENST00000593564 CLCN1P35523 988 aa24.56■■□□□ 1.52
LSM4-202ENST00000593564 ACADVLP49748 655 aa24.56■■□□□ 1.52
LSM4-202ENST00000593564 DNAJC3Q13217 504 aa24.56■■□□□ 1.52
LSM4-202ENST00000593564 SFMBT2Q5VUG0 894 aa24.56■■□□□ 1.52
LSM4-202ENST00000593564 SLC47A2Q86VL8 602 aa24.56■■□□□ 1.52
LSM4-202ENST00000593564 SPATS2Q86XZ4 545 aaKnown RBP24.56■■□□□ 1.52
LSM4-202ENST00000593564 ZDHHC17Q8IUH5 632 aa24.56■■□□□ 1.52
LSM4-202ENST00000593564 HNRNPLLQ8WVV9 542 aaKnown RBP24.56■■□□□ 1.52
LSM4-202ENST00000593564 DNAJC12Q9UKB3 198 aa24.56■■□□□ 1.52
LSM4-202ENST00000593564 HS3ST2Q9Y278 367 aa24.56■■□□□ 1.52
LSM4-202ENST00000593564 LOC400499M0QZD8 3231 aa24.56■■□□□ 1.52
LSM4-202ENST00000593564 MAGEC1O60732 1142 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 MTIF2P46199 727 aaKnown RBP24.55■■□□□ 1.52
LSM4-202ENST00000593564 BNIP3Q12983 259 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 CAMK4Q16566 473 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 BRMS1LQ5PSV4 323 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 KANSL1Q7Z3B3 1105 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 TSC1Q92574 1164 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 NPY6RQ99463 290 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 SIK2Q9H0K1 926 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 MUC3BQ9H195 1237 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 PREBQ9HCU5 417 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 PIGVQ9NUD9 493 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 ARHGEF38Q9NXL2 777 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 IGSF10Q6WRI0 2623 aa24.55■■□□□ 1.52
LSM4-202ENST00000593564 FOXN3O00409 490 aaPredicted RBP24.54■■□□□ 1.52
LSM4-202ENST00000593564 ADCY5O95622 1261 aa24.54■■□□□ 1.52
LSM4-202ENST00000593564 ZNF18P17022 549 aa24.54■■□□□ 1.52
LSM4-202ENST00000593564 HNF1BP35680 557 aa24.54■■□□□ 1.52
LSM4-202ENST00000593564 CXCR3P49682 368 aa24.54■■□□□ 1.52
LSM4-202ENST00000593564 STAT4Q14765 748 aa24.54■■□□□ 1.52
LSM4-202ENST00000593564 POM121L1PQ3SYA9 428 aa24.54■■□□□ 1.52
LSM4-202ENST00000593564 SETMARQ53H47 684 aaPredicted RBP24.54■■□□□ 1.52
LSM4-202ENST00000593564 MLKLQ8NB16 471 aa24.54■■□□□ 1.52
LSM4-202ENST00000593564 TKTL2Q9H0I9 626 aa24.54■■□□□ 1.52
LSM4-202ENST00000593564 A0A087WV48 116 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 PRAMEF26H0Y7S4 382 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 CNTN5O94779 1100 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 SRCP12931 536 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 BPIFB4P59827 614 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 UBE2HP62256 183 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 KRT83P78385 493 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 MAN2A1Q16706 1144 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 FAM71AQ8IYT1 594 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 ZNF683Q8IZ20 524 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 NT5C3BQ969T7 300 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 PGAP3Q96FM1 320 aaPredicted RBP24.53■■□□□ 1.52
LSM4-202ENST00000593564 PSMB7Q99436 277 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 C2orf49Q9BVC5 232 aaPredicted RBP24.53■■□□□ 1.52
LSM4-202ENST00000593564 WDCPQ9H6R7 721 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 PLCB1Q9NQ66 1216 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 ANLNQ9NQW6 1124 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP24.53■■□□□ 1.52
LSM4-202ENST00000593564 STAP1Q9ULZ2 295 aa24.53■■□□□ 1.52
LSM4-202ENST00000593564 I6L893 689 aaPredicted RBP24.52■■□□□ 1.52
LSM4-202ENST00000593564 MT-CO1P00395 513 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 RHOCP08134 193 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 PNMA6AP0CW24 399 aaPredicted RBP24.52■■□□□ 1.52
LSM4-202ENST00000593564 JUPP14923 745 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 TAS2R38P59533 333 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 ILKQ13418 452 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 ACAP1Q15027 740 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 ALFQ53S48 1182 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 SETD3Q86TU7 594 aaPredicted RBP24.52■■□□□ 1.52
LSM4-202ENST00000593564 TMEM35BQ8NCS4 154 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 NXPE2Q96DL1 559 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 CCDC114Q96M63 670 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 TMEM51Q9NW97 253 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 VPS51Q9UID3 782 aa24.52■■□□□ 1.52
LSM4-202ENST00000593564 FARP1Q9Y4F1 1045 aaPredicted RBP24.52■■□□□ 1.52
LSM4-202ENST00000593564 DRGXA6NNA5 263 aa24.51■■□□□ 1.51
LSM4-202ENST00000593564 BNIP3LO60238 219 aa24.51■■□□□ 1.51
LSM4-202ENST00000593564 SNAP91O60641 907 aa24.51■■□□□ 1.51
LSM4-202ENST00000593564 RNGTTO60942 597 aaKnown RBP24.51■■□□□ 1.51
LSM4-202ENST00000593564 F9P00740 461 aa24.51■■□□□ 1.51
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms