RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 OLFML1Q6UWY5 402 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 C11orf57Q6ZUT1 292 aaPredicted RBP21.65■■□□□ 1.06
VPS53-216ENST00000574029 FAM183BPQ6ZVS7 135 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 PASD1Q8IV76 773 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 SH2D3CQ8N5H7 860 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 PIP4K2CQ8TBX8 421 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 BBC3Q96PG8 261 aaPredicted RBP21.65■■□□□ 1.06
VPS53-216ENST00000574029 TBC1D30Q9Y2I9 924 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 URB1O60287 2271 aaKnown RBP21.65■■□□□ 1.06
VPS53-216ENST00000574029 DOCK9Q9BZ29 2069 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 MYLKQ15746 1914 aa21.65■■□□□ 1.06
VPS53-216ENST00000574029 PAGE1O75459 146 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 CLDN11O75508 207 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 DAB1O75553 588 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 ERBB2P04626 1255 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 NME3Q13232 169 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 ILKQ13418 452 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 STAT4Q14765 748 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 HES3Q5TGS1 186 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 GBP6Q6ZN66 633 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 Q6ZVU0 165 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 SLC26A9Q7LBE3 791 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 C14orf80Q86SX3 495 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 NOX5Q96PH1 765 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 RWDD2AQ9UIY3 292 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 VPS28Q9UK41 221 aa21.64■■□□□ 1.05
VPS53-216ENST00000574029 PRAMEF26H0Y7S4 382 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 GADD45BO75293 160 aaPredicted RBP21.63■■□□□ 1.05
VPS53-216ENST00000574029 ZNF18P17022 549 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 CKMT2P17540 419 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 NOS2P35228 1153 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 CDH4P55283 916 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 TAS2R38P59533 333 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 SLC6A3Q01959 620 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 TARDBPQ13148 414 aaKnown RBP eCLIP21.63■■□□□ 1.05
VPS53-216ENST00000574029 POM121L1PQ3SYA9 428 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 SETMARQ53H47 684 aaPredicted RBP21.63■■□□□ 1.05
VPS53-216ENST00000574029 OTUD1Q5VV17 481 aaPredicted RBP21.63■■□□□ 1.05
VPS53-216ENST00000574029 OR6B2Q6IFH4 312 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 C1orf131Q8NDD1 294 aaKnown RBP21.63■■□□□ 1.05
VPS53-216ENST00000574029 ZNF397Q8NF99 534 aaPredicted RBP21.63■■□□□ 1.05
VPS53-216ENST00000574029 PREBQ9HCU5 417 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 HS3ST2Q9Y278 367 aa21.63■■□□□ 1.05
VPS53-216ENST00000574029 GTPBP10A4D1E9 387 aaKnown RBP21.62■■□□□ 1.05
VPS53-216ENST00000574029 M0QYT0 321 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 RNGTTO60942 597 aaKnown RBP21.62■■□□□ 1.05
VPS53-216ENST00000574029 SRCP12931 536 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 PON1P27169 355 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 GGCXP38435 758 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 SNX16P57768 344 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 PTK2Q05397 1052 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 RTP5Q14D33 572 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 EXOC3L4Q17RC7 722 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 PIP5KL1Q5T9C9 394 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 CRELD1Q96HD1 420 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 DCBLD2Q96PD2 775 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 PSMB7Q99436 277 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 NRSN2Q9GZP1 204 aa21.62■■□□□ 1.05
VPS53-216ENST00000574029 CTSLP07711 333 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 ACP1P24666 158 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 ABCG1P45844 678 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 PROX2Q3B8N5 592 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 PTPN20Q4JDL3 420 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 IRF2BP1Q8IU81 584 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 CREBRFQ8IUR6 639 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 CACTIN-AS1Q8N1I8 211 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 TMEM145Q8NBT3 493 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 RFFLQ8WZ73 363 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 KLHDC7BQ96G42 594 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 NPY6RQ99463 290 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 SIK2Q9H0K1 926 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 MUC3BQ9H195 1237 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 SIX2Q9NPC8 291 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 ANLNQ9NQW6 1124 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 PIGVQ9NUD9 493 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 ARHGEF38Q9NXL2 777 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 AJAP1Q9UKB5 411 aaPredicted RBP21.61■■□□□ 1.05
VPS53-216ENST00000574029 CA5BQ9Y2D0 317 aa21.61■■□□□ 1.05
VPS53-216ENST00000574029 ARID1BQ8NFD5 2236 aaPredicted RBP21.6■■□□□ 1.05
VPS53-216ENST00000574029 LOC400499M0QZD8 3231 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 BNIP3LO60238 219 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 CNTN5O94779 1100 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 MT-CO1P00395 513 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 EIF2S3P41091 472 aaKnown RBP21.6■■□□□ 1.05
VPS53-216ENST00000574029 CXCR3P49682 368 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 KRT83P78385 493 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 ALFQ53S48 1182 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 BRMS1LQ5PSV4 323 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 NEK5Q6P3R8 708 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 ZDHHC17Q8IUH5 632 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 ZNF683Q8IZ20 524 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 WDCPQ9H6R7 721 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 RRN3Q9NYV6 651 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 AK5Q9Y6K8 562 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 IGSF10Q6WRI0 2623 aa21.6■■□□□ 1.05
VPS53-216ENST00000574029 I6L893 689 aaPredicted RBP21.59■■□□□ 1.05
VPS53-216ENST00000574029 TLX3O43711 291 aaPredicted RBP21.59■■□□□ 1.05
VPS53-216ENST00000574029 SNAP91O60641 907 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 SDC3O75056 442 aa21.59■■□□□ 1.05
VPS53-216ENST00000574029 ADCY5O95622 1261 aa21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms