RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	RPL22	P35268	128 aa	Known RBP	10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	MAPK8	P45983	427 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	CSE1L	P55060	971 aa	Known RBP	10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	HADHB	P55084	474 aa	Known RBP	10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	FAM189B	P81408	668 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	GNA12	Q03113	381 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	SULT2A1	Q06520	285 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	CCDC6	Q16204	474 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	CA9	Q16790	459 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	TMEM240	Q5SV17	173 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	KIAA1324	Q6UXG2	1013 aa	Known RBP	10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	TAS1R1	Q7RTX1	841 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	PRUNE1	Q86TP1	453 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	CXXC1	Q9P0U4	656 aa	Predicted RBP	10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	AGO1	Q9UL18	857 aa	Known RBP	10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	SLC39A10	Q9ULF5	831 aa		10.31	□□□□□ -0.76
SMG6-213	ENST00000573166	DDX3Y	O15523	660 aa	Known RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	TTC4	O95801	387 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	APOD	P05090	189 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	SERPINB9	P50453	376 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	CDH4	P55283	916 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	SGCG	Q13326	291 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	PARP15	Q460N3	678 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	MROH9	Q5TGP6	573 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	CCSAP	Q6IQ19	270 aa	Predicted RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	LINGO4	Q6UY18	593 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	METTL3	Q86U44	580 aa	Known RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	TSPAN17	Q96FV3	270 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	OMD	Q99983	421 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	LRRC19	Q9H756	370 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	ATP13A3	Q9H7F0	1226 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	ETNK2	Q9NVF9	386 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	HACD3	Q9P035	362 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	KLHL14	Q9P2G3	628 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	FZD10	Q9ULW2	581 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	VPS9D1	Q9Y2B5	631 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	GABRD	O14764	452 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	MGAT1	P26572	445 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	WAS	P42768	502 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	ALKAL1	Q6UXT8	129 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	OTOP3	Q7RTS5	596 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	PTAR1	Q7Z6K3	402 aa	Predicted RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	HAPLN3	Q96S86	360 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	KLF6	Q99612	283 aa	Predicted RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	TBL1Y	Q9BQ87	522 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	TSSK1B	Q9BXA7	367 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	SMOC2	Q9H3U7	446 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	R3HDM2	Q9Y2K5	976 aa	Known RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	SBF1	O95248	1867 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	ERI2	A8K979	691 aa	Known RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	GRM6	O15303	877 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	SPAG7	O75391	227 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	MYBL2	P10244	700 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	CDH5	P33151	784 aa	Predicted RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	HTR7	P34969	479 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	ELK3	P41970	407 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	GAD2	Q05329	585 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	DSC1	Q08554	894 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	NOMO1	Q15155	1222 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	SHH	Q15465	462 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	AARS2	Q5JTZ9	985 aa	Known RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	GLT6D1	Q7Z4J2	308 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	CFAP61	Q8NHU2	1237 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	PIWIL1	Q96J94	861 aa	Known RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	FOPNL	Q96NB1	174 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	PABPC3	Q9H361	631 aa	Known RBP	10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	TRABD	Q9H4I3	376 aa		10.3	□□□□□ -0.76
SMG6-213	ENST00000573166	E2F8	A0AVK6	867 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	RHOBTB1	O94844	696 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	ITGAV	P06756	1048 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	SNRPA	P09012	282 aa	Known RBP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	KCNA5	P22460	613 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	DDX6	P26196	483 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	GDI1	P31150	447 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	XRCC4	Q13426	336 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	LBR	Q14739	615 aa	Known RBP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	TTC39B	Q5VTQ0	682 aa	Predicted RBP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	TRIM67	Q6ZTA4	783 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	CHST9	Q7L1S5	443 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	GPRIN1	Q7Z2K8	1008 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	SERBP1	Q8NC51	408 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	NTAN1	Q96AB6	310 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	FAM136A	Q96C01	138 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	PPP1R16A	Q96I34	528 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	SMG9	Q9H0W8	520 aa	Known RBP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	CDC42EP4	Q9H3Q1	356 aa	Known RBP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	IARS2	Q9NSE4	1012 aa	Known RBP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	MTPAP	Q9NVV4	582 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	CNTN6	Q9UQ52	1028 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	PCDHB9	Q9Y5E1	797 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	KNL1	Q8NG31	2342 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	ATAD5	Q96QE3	1844 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	C1QTNF3-AMACR	E9PGA6	284 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	HNRNPA1	P09651	372 aa	Known RBP eCLIP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	HIST1H2AG	P0C0S8	130 aa	Predicted RBP	10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	GFAP	P14136	432 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	HIST1H2AD	P20671	130 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	RGS4	P49798	205 aa		10.29	□□□□□ -0.76
SMG6-213	ENST00000573166	OGDH	Q02218	1023 aa		10.29	□□□□□ -0.76

Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms