RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 TIMM44O43615 452 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 F9P00740 461 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 NCF2P19878 526 aaPredicted RBP23.22■■□□□ 1.31
VPS53-211ENST00000571805 BEX3Q00994 111 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 AAGABQ6PD74 315 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 ACTRT2Q8TDY3 377 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 PARK7Q99497 189 aaKnown RBP23.22■■□□□ 1.31
VPS53-211ENST00000571805 TTC1Q99614 292 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 TKTL2Q9H0I9 626 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 NMRAL1Q9HBL8 299 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 IARS2Q9NSE4 1012 aaKnown RBP23.22■■□□□ 1.31
VPS53-211ENST00000571805 NDE1Q9NXR1 346 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 LRIG2O94898 1065 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 C3orf58Q8NDZ4 430 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 MAPK15Q8TD08 544 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 VPS39Q96JC1 886 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 SHCBP1LQ9BZQ2 653 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 PTCH2Q9Y6C5 1203 aa23.22■■□□□ 1.31
VPS53-211ENST00000571805 TRIM13O60858 407 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 HSPA4LO95757 839 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 JCHAINP01591 159 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 NMBRP28336 390 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 HOXC8P31273 242 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 CLCNKBP51801 687 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 IRF5Q13568 498 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 SLC9B1Q4ZJI4 515 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 PM20D1Q6GTS8 502 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 ADGRG6Q86SQ4 1221 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 GATA6Q92908 595 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 EPAS1Q99814 870 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 S100A14Q9HCY8 104 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 MIOSQ9NXC5 875 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 UBP1Q9NZI7 540 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 ZBTB14O43829 449 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 SP100P23497 879 aaPredicted RBP23.21■■□□□ 1.31
VPS53-211ENST00000571805 SERPINB6P35237 376 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 ZNF135P52742 658 aaPredicted RBP23.21■■□□□ 1.31
VPS53-211ENST00000571805 MORN1Q5T089 497 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 TMEM151AQ8N4L1 468 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 GATA5Q9BWX5 397 aaPredicted RBP23.21■■□□□ 1.31
VPS53-211ENST00000571805 MAN1C1Q9NR34 630 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 SLC38A7Q9NVC3 462 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 OXSMQ9NWU1 459 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 DLGAP2Q9P1A6 1054 aa23.21■■□□□ 1.31
VPS53-211ENST00000571805 DCXO43602 365 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 BUD23O43709 281 aaKnown RBP23.2■■□□□ 1.3
VPS53-211ENST00000571805 SORBS2O94875 1100 aaKnown RBP23.2■■□□□ 1.3
VPS53-211ENST00000571805 BAG2O95816 211 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 ITGAXP20702 1163 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 CRABP2P29373 138 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 PSEN1P49768 467 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 CPT1AP50416 773 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 FRMD7Q6ZUT3 714 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 KLHDC8BQ8IXV7 354 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 CNTD1Q8N815 330 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 GAD1Q99259 594 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 RHOBTB2Q9BYZ6 727 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 CDH9Q9ULB4 789 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 COL4A4P53420 1690 aaPredicted RBP23.2■■□□□ 1.3
VPS53-211ENST00000571805 LOC100653049A0A140TA62 436 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 GOLGA8TH3BQL2 631 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 KRT34O76011 436 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 PRDX6P30041 224 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 ITGA7Q13683 1181 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 GRM3Q14832 879 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 KIFC1Q9BW19 673 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 C1QTNF1Q9BXJ1 281 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 CSNK1G1Q9HCP0 422 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 CDH22Q9UJ99 828 aa23.2■■□□□ 1.3
VPS53-211ENST00000571805 CACNG3O60359 315 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 NUMBP49757 651 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 CDH17Q12864 832 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 CCNIQ14094 377 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 OR52E8Q6IFG1 317 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 OTOP3Q7RTS5 596 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 CELF6Q96J87 481 aaKnown RBP23.19■■□□□ 1.3
VPS53-211ENST00000571805 GPR22Q99680 433 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 CPSF2Q9P2I0 782 aaKnown RBP23.19■■□□□ 1.3
VPS53-211ENST00000571805 H2AFYO75367 372 aaKnown RBP23.19■■□□□ 1.3
VPS53-211ENST00000571805 SBK3P0C264 359 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 COX4I1P13073 169 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 EPHB1P54762 984 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 MAP2K5Q13163 448 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 PEX6Q13608 980 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 FSCBQ5H9T9 825 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 METTL21CQ5VZV1 264 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 DCLRE1AQ6PJP8 1040 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 IZUMO2Q6UXV1 221 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 RNF111Q6ZNA4 994 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 APLFQ8IW19 511 aaPredicted RBP23.19■■□□□ 1.3
VPS53-211ENST00000571805 TDRD5Q8NAT2 981 aaKnown RBP23.19■■□□□ 1.3
VPS53-211ENST00000571805 SMARCD1Q96GM5 515 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 ECSITQ9BQ95 431 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 SLC39A10Q9ULF5 831 aa23.19■■□□□ 1.3
VPS53-211ENST00000571805 E9PBE3 544 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 KLHL41O60662 606 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 PDE5AO76074 875 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 THP07101 528 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 GLDCP23378 1020 aa23.18■■□□□ 1.3
VPS53-211ENST00000571805 HADHAP40939 763 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms