RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 LUC7L2Q9Y383 392 aaKnown RBP15.42■□□□□ 0.06
VPS39-210ENST00000568357 BZW2Q9Y6E2 419 aaKnown RBP15.42■□□□□ 0.06
VPS39-210ENST00000568357 WDFY3Q8IZQ1 3526 aa15.42■□□□□ 0.06
VPS39-210ENST00000568357 LNP1A1A4G5 178 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 ILVBLA1L0T0 632 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 TMEM191CA6NGB0 347 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 K7ERQ8 282 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 TM4SF5O14894 197 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 ATP9BO43861 1147 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 DNTTP04053 509 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 GLDCP23378 1020 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 NNMTP40261 264 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 SCAPQ12770 1279 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 DLG2Q15700 870 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 ACCSLQ4AC99 568 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 TRIM61Q5EBN2 209 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 RWDD4Q6NW29 188 aaKnown RBP15.41■□□□□ 0.06
VPS39-210ENST00000568357 TMC6Q7Z403 805 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 NLRP14Q86W24 1093 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 DRC7Q8IY82 874 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 ARFGAP1Q8N6T3 406 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 CADM4Q8NFZ8 388 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 COL26A1Q96A83 441 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 IQCDQ96DY2 449 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP15.41■□□□□ 0.06
VPS39-210ENST00000568357 PABPC3Q9H361 631 aaKnown RBP15.41■□□□□ 0.06
VPS39-210ENST00000568357 CNOT8Q9UFF9 292 aaKnown RBP15.41■□□□□ 0.06
VPS39-210ENST00000568357 VPS51Q9UID3 782 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 SLC25A13Q9UJS0 675 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 NEU3Q9UQ49 428 aa15.41■□□□□ 0.06
VPS39-210ENST00000568357 CKAP5Q14008 2032 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 METTL12A8MUP2 240 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 MID1O15344 667 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 SERPING1P05155 500 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 SRCP12931 536 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 RHOQP17081 205 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 SLC8A1P32418 973 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 LIMK1P53667 647 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 KRT83P78385 493 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 ZNF252P-AS1Q0IIN9 211 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 CST6Q15828 149 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 TDRD12Q587J7 1177 aaKnown RBP15.4■□□□□ 0.06
VPS39-210ENST00000568357 STPG1Q5TH74 334 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 LINGO4Q6UY18 593 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 SH2D3CQ8N5H7 860 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 FOXJ1Q92949 421 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 ZNF653Q96CK0 615 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 SPON2Q9BUD6 331 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 C2orf49Q9BVC5 232 aaPredicted RBP15.4■□□□□ 0.06
VPS39-210ENST00000568357 C6orf106Q9H6K1 298 aaPredicted RBP15.4■□□□□ 0.06
VPS39-210ENST00000568357 FSCN3Q9NQT6 498 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 ARHGAP20Q9P2F6 1191 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 SERGEFQ9UGK8 458 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 EVLQ9UI08 416 aaPredicted RBP15.4■□□□□ 0.06
VPS39-210ENST00000568357 FZD10Q9ULW2 581 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 HS3ST2Q9Y278 367 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 SPAG17Q6Q759 2223 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 THADAQ6YHU6 1953 aa15.4■□□□□ 0.06
VPS39-210ENST00000568357 A0A087X0T9 212 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 SMAD6O43541 496 aaKnown RBP15.39■□□□□ 0.05
VPS39-210ENST00000568357 RNASEH1O60930 286 aaKnown RBP15.39■□□□□ 0.05
VPS39-210ENST00000568357 ZMPSTE24O75844 475 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 TPM3P06753 285 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 FAM228BP0C875 321 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 PSMA2P25787 234 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 L1CAMP32004 1257 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 HOXD12P35452 270 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 DPP6P42658 865 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 METAP1P53582 386 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 GNA12Q03113 381 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 ELAVL3Q14576 367 aaKnown RBP15.39■□□□□ 0.05
VPS39-210ENST00000568357 TTC31Q49AM3 519 aaPredicted RBP15.39■□□□□ 0.05
VPS39-210ENST00000568357 WDR45BQ5MNZ6 344 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 SYCP2LQ5T4T6 812 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 DCAF12L1Q5VU92 463 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 SLC23A3Q6PIS1 610 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 ZNF783Q6ZMS7 281 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 Q6ZVU0 165 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 RGL4Q8IZJ4 473 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 AADATQ8N5Z0 425 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 DCAF4L2Q8NA75 395 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 ATP11CQ8NB49 1132 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 GANCQ8TET4 914 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 DNASE2BQ8WZ79 361 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 TBC1D31Q96DN5 1066 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 BTBD1Q9H0C5 482 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 NEUROG2Q9H2A3 272 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 TMEM248Q9NWD8 314 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 FBXL12Q9NXK8 326 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 MYO1AQ9UBC5 1043 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 DNAI1Q9UI46 699 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 SARDHQ9UL12 918 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 SCML1Q9UN30 329 aa15.39■□□□□ 0.05
VPS39-210ENST00000568357 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.39■□□□□ 0.05
VPS39-210ENST00000568357 A0A1W2PP55 124 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 C4orf47A7E2U8 309 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 CBX4O00257 560 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 CDX4O14627 284 aaPredicted RBP15.38■□□□□ 0.05
VPS39-210ENST00000568357 MCF2LO15068 1137 aa15.38■□□□□ 0.05
VPS39-210ENST00000568357 CBFA2T2O43439 604 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms