RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CNTN5O94779 1100 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 FGFR1OPO95684 399 aaKnown RBP17.32■□□□□ 0.36
CLN3-211ENST00000564091 MT-CO1P00395 513 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 HNF1BP35680 557 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 VASPP50552 380 aaPredicted RBP17.32■□□□□ 0.36
CLN3-211ENST00000564091 SEMG2Q02383 582 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 BECN1Q14457 450 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 STAT4Q14765 748 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 C6orf118Q5T5N4 469 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 OLFML1Q6UWY5 402 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 GBP6Q6ZN66 633 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 OXR1Q8N573 874 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 SHC3Q92529 594 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 PPP1R9BQ96SB3 815 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 ANLNQ9NQW6 1124 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 AJAP1Q9UKB5 411 aaPredicted RBP17.32■□□□□ 0.36
CLN3-211ENST00000564091 PCDHGC3Q9UN70 934 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 SNX10Q9Y5X0 201 aa17.32■□□□□ 0.36
CLN3-211ENST00000564091 M0QYT0 321 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 SNAP91O60641 907 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 CLDN11O75508 207 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 CTSLP07711 333 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 CDK4P11802 303 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 ITPKBP27987 946 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 TAS2R38P59533 333 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 EXOC3L4Q17RC7 722 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 OTUD1Q5VV17 481 aaPredicted RBP17.31■□□□□ 0.36
CLN3-211ENST00000564091 FBXL19Q6PCT2 694 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 IQCHQ86VS3 1027 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 TRIM69Q86WT6 500 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 SH2D3CQ8N5H7 860 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 KLK6Q92876 244 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 NXPE2Q96DL1 559 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 FAM81BQ96LP2 452 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 MYOCQ99972 504 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 MUC3BQ9H195 1237 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 CAAP1Q9H8G2 361 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 PLCB1Q9NQ66 1216 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 DMTF1Q9Y222 760 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 TBC1D30Q9Y2I9 924 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 AK5Q9Y6K8 562 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 ADAMTS20P59510 1910 aa17.31■□□□□ 0.36
CLN3-211ENST00000564091 FAM170AA1A519 330 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 PRAMEF26H0Y7S4 382 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 K7ERQ8 282 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 SLC31A1O15431 190 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 TLX3O43711 291 aaPredicted RBP17.3■□□□□ 0.36
CLN3-211ENST00000564091 RNGTTO60942 597 aaKnown RBP17.3■□□□□ 0.36
CLN3-211ENST00000564091 DAB1O75553 588 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 ADCY5O95622 1261 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 PNMA6AP0CW24 399 aaPredicted RBP17.3■□□□□ 0.36
CLN3-211ENST00000564091 PRLRP16471 622 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 CKMT2P17540 419 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 TFE3P19532 575 aaPredicted RBP17.3■□□□□ 0.36
CLN3-211ENST00000564091 PON1P27169 355 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 NUDT1P36639 197 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 SLC6A3Q01959 620 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 PTK2Q05397 1052 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 OVGP1Q12889 678 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 PTPN20Q4JDL3 420 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 SETMARQ53H47 684 aaPredicted RBP17.3■□□□□ 0.36
CLN3-211ENST00000564091 ALFQ53S48 1182 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 SLC47A2Q86VL8 602 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 ATP11CQ8NB49 1132 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 KLHDC7BQ96G42 594 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 NOX5Q96PH1 765 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 PSMB7Q99436 277 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 TKTL2Q9H0I9 626 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 SYNCQ9H7C4 482 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 PIGVQ9NUD9 493 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 RWDD2AQ9UIY3 292 aa17.3■□□□□ 0.36
CLN3-211ENST00000564091 BPTFQ12830 3046 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 A0A1W2PQU0 124 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 I6L893 689 aaPredicted RBP17.29■□□□□ 0.36
CLN3-211ENST00000564091 RNF103O00237 685 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 FOXN3O00409 490 aaPredicted RBP17.29■□□□□ 0.36
CLN3-211ENST00000564091 TRIM38O00635 465 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 ALOX15BO15296 676 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 SIGLEC6O43699 453 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 MAGEC1O60732 1142 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 RHOCP08134 193 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 SRCP12931 536 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 CHRNA3P32297 505 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 NOS2P35228 1153 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 KRT9P35527 623 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 ABCG1P45844 678 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 CDH4P55283 916 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 RNASE9P60153 205 aaKnown RBP17.29■□□□□ 0.36
CLN3-211ENST00000564091 C5orf22Q49AR2 442 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 PIP5KL1Q5T9C9 394 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 SLC26A9Q7LBE3 791 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 IRF2BP1Q8IU81 584 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 SLC25A45Q8N413 288 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 OR2A12Q8NGT7 310 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 ARRDC3Q96B67 414 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 PREBQ9HCU5 417 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 SIX2Q9NPC8 291 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 DNAJC12Q9UKB3 198 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 HS3ST2Q9Y278 367 aa17.29■□□□□ 0.36
CLN3-211ENST00000564091 PTPRBP23467 1997 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms