RNA–Protein interactions for RNA: ENST00000560829.5

SNX1-211, Transcript of sorting nexin 1, humanhuman

TSL 5 BASIC

Gene SNX1, Length 1,869 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-211ENST00000560829 RAMP2O60895 175 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 OLFM2O95897 454 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 INHBAP08476 426 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 SLC6A4P31645 630 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 NPY2RP49146 381 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 RENBPP51606 427 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 MPP2Q14168 576 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 FRG1Q14331 258 aaKnown RBP13.16□□□□□ -0.3
SNX1-211ENST00000560829 SPARCL1Q14515 664 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 PABPC1LQ4VXU2 614 aaKnown RBP13.16□□□□□ -0.3
SNX1-211ENST00000560829 LINC00523Q86TU6 105 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 TEX26Q8N6G2 289 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 OR52K1Q8NGK4 314 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 BCAS4Q8TDM0 211 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 USP33Q8TEY7 942 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 RNF38Q9H0F5 515 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 RBM22Q9NW64 420 aaKnown RBP eCLIP13.16□□□□□ -0.3
SNX1-211ENST00000560829 SYBUQ9NX95 663 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 BFARQ9NZS9 450 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 SMG5Q9UPR3 1016 aaKnown RBP13.16□□□□□ -0.3
SNX1-211ENST00000560829 IKBKGQ9Y6K9 419 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 C2orf78A6NCI8 922 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 GMNCA6NCL1 334 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 LATS1O95835 1130 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 KLKB1P03952 638 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 HLA-DQB2P05538 268 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 GEMP55040 296 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 IL10RBQ08334 325 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 CDH17Q12864 832 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 SERINC3Q13530 473 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 POLD3Q15054 466 aaPredicted RBP13.16□□□□□ -0.3
SNX1-211ENST00000560829 GLIPR1L2Q4G1C9 344 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 RABGAP1LQ5R372 815 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 OTOP3Q7RTS5 596 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 TMEM135Q86UB9 458 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 LGI2Q8N0V4 545 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 CNPY4Q8N129 248 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 MRRFQ96E11 262 aaKnown RBP13.16□□□□□ -0.3
SNX1-211ENST00000560829 SGSM3Q96HU1 749 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 SMC6Q96SB8 1091 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 TRIM56Q9BRZ2 755 aaKnown RBP13.16□□□□□ -0.3
SNX1-211ENST00000560829 ZNF334Q9HCZ1 680 aaPredicted RBP13.16□□□□□ -0.3
SNX1-211ENST00000560829 SMYD2Q9NRG4 433 aa13.16□□□□□ -0.3
SNX1-211ENST00000560829 ZNF638Q14966 1978 aaKnown RBP13.15□□□□□ -0.3
SNX1-211ENST00000560829 MAGEB16A2A368 324 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 FAM47DPA6NHR8 397 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 CXorf49A8MYA2 514 aaPredicted RBP13.15□□□□□ -0.3
SNX1-211ENST00000560829 TYROBPO43914 113 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 USP12O75317 370 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 PIAS1O75925 651 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 CXCL14O95715 111 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 FAM107AO95990 144 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 ADH1AP07327 375 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 OR1E1P30953 314 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 CORO1AP31146 461 aaKnown RBP13.15□□□□□ -0.3
SNX1-211ENST00000560829 BMPR1AP36894 532 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 CDH4P55283 916 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 NAB1Q13506 487 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 OLIG2Q13516 323 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 CRYMQ14894 314 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 SPANXN3Q5MJ09 141 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 CASC4Q6P4E1 433 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 TRMT10BQ6PF06 316 aaKnown RBP13.15□□□□□ -0.3
SNX1-211ENST00000560829 CCDC149Q6ZUS6 474 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 CCDC117Q8IWD4 279 aaPredicted RBP13.15□□□□□ -0.3
SNX1-211ENST00000560829 DENND1AQ8TEH3 1009 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 ALKBH8Q96BT7 664 aaKnown RBP13.15□□□□□ -0.3
SNX1-211ENST00000560829 ZFRQ96KR1 1074 aaKnown RBP13.15□□□□□ -0.3
SNX1-211ENST00000560829 KLHL5Q96PQ7 755 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 MCOLN1Q9GZU1 580 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 IL22Q9GZX6 179 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 SLC25A51Q9H1U9 297 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 KCNK9Q9NPC2 374 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 PPANQ9NQ55 473 aaKnown RBP13.15□□□□□ -0.3
SNX1-211ENST00000560829 SLC4A7Q9Y6M7 1214 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 PTPRSQ13332 1948 aa13.15□□□□□ -0.3
SNX1-211ENST00000560829 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP13.14□□□□□ -0.31
SNX1-211ENST00000560829 A0A1W2PPM1 405 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 H3BNC9 293 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 J3KR12 359 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 CLDN11O75508 207 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 POLBP06746 335 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 ADRA1AP35348 466 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 SEC24CP53992 1094 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 CRADDP78560 199 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 NIPAL4Q0D2K0 466 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 ZSCAN26Q16670 478 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 ADGRF1Q5T601 910 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 MARC1Q5VT66 337 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 ARMC3Q5W041 872 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 MARK2Q7KZI7 788 aaKnown RBP13.14□□□□□ -0.31
SNX1-211ENST00000560829 CHST9Q7L1S5 443 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 TMC7Q7Z402 723 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 CIR1Q86X95 450 aaPredicted RBP13.14□□□□□ -0.31
SNX1-211ENST00000560829 DENND1CQ8IV53 801 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 CTAGE3PQ8IX95 158 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 PPM1NQ8N819 430 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 DNAAF3Q8N9W5 541 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 SPATA22Q8NHS9 363 aa13.14□□□□□ -0.31
SNX1-211ENST00000560829 PRICKLE1Q96MT3 831 aaPredicted RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms