RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 HMGB4Q8WW32 186 aa17.9■□□□□ 0.46
SHMT2-225ENST00000556798 HMCESQ96FZ2 354 aa17.9■□□□□ 0.46
SHMT2-225ENST00000556798 ZNF830Q96NB3 372 aaPredicted RBP17.9■□□□□ 0.46
SHMT2-225ENST00000556798 SLC6A17Q9H1V8 727 aa17.9■□□□□ 0.46
SHMT2-225ENST00000556798 MAGEH1Q9H213 219 aa17.9■□□□□ 0.46
SHMT2-225ENST00000556798 CD248Q9HCU0 757 aa17.9■□□□□ 0.46
SHMT2-225ENST00000556798 POLMQ9NP87 494 aaPredicted RBP17.9■□□□□ 0.46
SHMT2-225ENST00000556798 ETNK2Q9NVF9 386 aa17.9■□□□□ 0.46
SHMT2-225ENST00000556798 ACTL7AQ9Y615 435 aa17.9■□□□□ 0.46
SHMT2-225ENST00000556798 PLXND1Q9Y4D7 1925 aa17.9■□□□□ 0.46
SHMT2-225ENST00000556798 LRRD1A4D1F6 860 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 RASA4BC9J798 803 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 RASA4O43374 803 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 SYNCRIPO60506 623 aaKnown RBP17.89■□□□□ 0.45
SHMT2-225ENST00000556798 ZMPSTE24O75844 475 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 MT-CO1P00395 513 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 CCDC175P0C221 793 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 MARCKSL1P49006 195 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 ARF5P84085 180 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 LEKR1Q6ZMV7 388 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 CACUL1Q86Y37 369 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 RHOT1Q8IXI2 618 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 UMODL1-AS1Q8N2C9 162 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 CAMKK1Q8N5S9 505 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 MDGA1Q8NFP4 955 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 ACE2Q9BYF1 805 aaPredicted RBP17.89■□□□□ 0.45
SHMT2-225ENST00000556798 KLC2Q9H0B6 622 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 KCNF1Q9H3M0 494 aa17.89■□□□□ 0.45
SHMT2-225ENST00000556798 BCCIPQ9P287 314 aaKnown RBP eCLIP17.89■□□□□ 0.45
SHMT2-225ENST00000556798 SPAG17Q6Q759 2223 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 CEP192Q8TEP8 1941 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 K7ERQ8 282 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 DCLK1O15075 740 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 VAV1P15498 845 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 GABRG2P18507 467 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 KDELR1P24390 212 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 ETFBP38117 255 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 PTPN5P54829 565 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 PDK2Q15119 407 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 ZNF528Q3MIS6 628 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 LRRC38Q5VT99 294 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 ARHGAP12Q8IWW6 846 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 TP53INP2Q8IXH6 220 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 PGBD3Q8N328 593 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 SH2D3CQ8N5H7 860 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 LRRC57Q8N9N7 239 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 ATP11CQ8NB49 1132 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 ZNF670Q9BS34 389 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 TPSD1Q9BZJ3 242 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 SLC39A8Q9C0K1 460 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 KCNH6Q9H252 994 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 LRRC19Q9H756 370 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 FAM86C1Q9NVL1 165 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 RCOR3Q9P2K3 495 aaPredicted RBP17.88■□□□□ 0.45
SHMT2-225ENST00000556798 CAPN6Q9Y6Q1 641 aa17.88■□□□□ 0.45
SHMT2-225ENST00000556798 DFFAO00273 331 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 SMAD6O43541 496 aaKnown RBP17.87■□□□□ 0.45
SHMT2-225ENST00000556798 PSTPIP1O43586 416 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 SIN3BO75182 1162 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 PALMO75781 387 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 ALDH1A2O94788 518 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 SRCP12931 536 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 NDUFV2P19404 249 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 NNMTP40261 264 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 NDST2P52849 883 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 YBEYP58557 167 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-225ENST00000556798 CAMK2GQ13555 558 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-225ENST00000556798 HNRNPA1L2Q32P51 320 aaKnown RBP17.87■□□□□ 0.45
SHMT2-225ENST00000556798 PARP15Q460N3 678 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 ACCSLQ4AC99 568 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 ANKRD20A8PQ5CZ79 823 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 TMCO3Q6UWJ1 677 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 RASSF3Q86WH2 238 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 MAP7D3Q8IWC1 876 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 KDM1BQ8NB78 822 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 PCDH19Q8TAB3 1148 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 KIAA1524Q8TCG1 905 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 KRT35Q92764 455 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 NELL1Q92832 810 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 ATOH1Q92858 354 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-225ENST00000556798 RNF25Q96BH1 459 aaPredicted RBP17.87■□□□□ 0.45
SHMT2-225ENST00000556798 CALR3Q96L12 384 aaKnown RBP17.87■□□□□ 0.45
SHMT2-225ENST00000556798 TSGA10Q9BZW7 698 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 LZTFL1Q9NQ48 299 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 PRSS16Q9NQE7 514 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 DONSONQ9NYP3 566 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 HPCAL4Q9UM19 191 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 GUCA1BQ9UMX6 200 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 HS3ST2Q9Y278 367 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 R4GN57 208 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 ANKRD36A6QL64 1941 aa17.87■□□□□ 0.45
SHMT2-225ENST00000556798 C3orf70A6NLC5 250 aaPredicted RBP17.86■□□□□ 0.45
SHMT2-225ENST00000556798 AXIN1O15169 862 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 KDELR3O43731 214 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 ATP9BO43861 1147 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 HOXA6P31267 233 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 SERPINH1P50454 418 aaKnown RBP17.86■□□□□ 0.45
SHMT2-225ENST00000556798 PAPOLAP51003 745 aaKnown RBP17.86■□□□□ 0.45
SHMT2-225ENST00000556798 COPAP53621 1224 aa17.86■□□□□ 0.45
SHMT2-225ENST00000556798 SRSF5Q13243 272 aaKnown RBP17.86■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms