RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 ANKRD31Q8N7Z5 1873 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FUOMA2VDF0 154 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 RGSL1A5PLK6 1076 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PRORSD1PA6NEY8 169 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 C9IYK1 514 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 E7ENX8 843 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 GPR25O00155 361 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FBP2O00757 339 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PAPSS1O43252 624 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 BCAS2O75934 225 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ALDH1A2O94788 518 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 VAPBO95292 243 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SUPT20HL2P0C7V6 817 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 PORP16435 677 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 MAGEA6P43360 314 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 BAG6P46379 1132 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 YAP1P46937 504 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF143P52747 638 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 OXCT1P55809 520 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 YWHAEP62258 255 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TAP1Q03518 808 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 BNIP3Q12983 259 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF460Q14592 562 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TMEM132BQ14DG7 1078 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SUPT20HL1Q3ZLR7 823 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ARL13AQ5H913 290 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 IL31Q6EBC2 164 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FSTL4Q6MZW2 842 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 GPR180Q86V85 440 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SNX29P2Q8IUI4 249 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SCUBE3Q8IX30 993 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 REM2Q8IYK8 340 aaPredicted RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 GPRASP2Q96D09 838 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 LRCH3Q96II8 777 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF597Q96LX8 424 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 AGAP3Q96P47 875 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 MRPL4Q9BYD3 311 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF518BQ9C0D4 1074 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 Q9H521 79 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 RPF1Q9H9Y2 349 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 FAM49BQ9NUQ9 324 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 HOXC10Q9NYD6 342 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 SEPT10Q9P0V9 454 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 COPG1Q9Y678 874 aaKnown RBP4.95□□□□□ -1.62
LIMA1-214ENST00000552783 TLL2Q9Y6L7 1015 aa4.95□□□□□ -1.62
LIMA1-214ENST00000552783 BCLAF3A2AJT9 711 aaKnown RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 MATN2O00339 956 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 HTRA2O43464 458 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 B4GAT1O43505 415 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 HCRTO43612 131 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 TIPRLO75663 272 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ALDH2P05091 517 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 PFKMP08237 780 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 CXCL8P10145 99 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 SAT1P21673 171 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ACAT1P24752 427 aaKnown RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 GRIA3P42263 894 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 HALP42357 657 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 TXNL4AP83876 142 aaKnown RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 PMS2P3Q13401 168 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 KCTD2Q14681 263 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 AMHR2Q16671 573 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 HSP90AA5PQ58FG0 334 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 NHSL2Q5HYW2 709 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 GJC2Q5T442 439 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 NXNQ6DKJ4 435 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 DCLRE1AQ6PJP8 1040 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 DHRS4L2Q6PKH6 230 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 LAYNQ6UX15 382 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ABHD15Q6UXT9 468 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 DCDC5Q6ZRR9 648 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 BRSK2Q8IWQ3 736 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 LSMEM2Q8N112 164 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 NAT16Q8N8M0 369 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 SPATA33Q96N06 139 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 CORO1BQ9BR76 489 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 FRMD8P1Q9BZ68 369 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 PORCNQ9H237 461 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 CXCL16Q9H2A7 254 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 STN1Q9H668 368 aaKnown RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ZNF385DQ9H6B1 395 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ADA2Q9NZK5 511 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 PCDHGA7Q9Y5G6 932 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 NUP205Q92621 2012 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 H3BMQ9 156 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 APOL1O14791 398 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 PRPSAP2O60256 369 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 MSCO60682 206 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 PIGNO95427 931 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ZBTB11O95625 1053 aaPredicted RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 MT-CO1P00395 513 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ITGB3P05106 788 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ATP5BP06576 529 aaKnown RBP4.94□□□□□ -1.62
LIMA1-214ENST00000552783 TFEBP19484 476 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 ME2P23368 584 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 CYP2F1P24903 491 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 GRK2P25098 689 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 PRDX6P30041 224 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 HOXD12P35452 270 aa4.94□□□□□ -1.62
LIMA1-214ENST00000552783 SOX11P35716 441 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms