RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 EPHA3P29320 983 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 SKIV2L2P42285 1042 aaKnown RBP17.24■□□□□ 0.35
USP28-208ENST00000540438 MUM1Q2TAK8 710 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 SLC9B1Q4ZJI4 515 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 ZNF789Q5FWF6 425 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 OVOS1Q6IE37 1185 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 ATAD1Q8NBU5 361 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 GTF3C2Q8WUA4 911 aaPredicted RBP17.24■□□□□ 0.35
USP28-208ENST00000540438 NAT14Q8WUY8 206 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 UCMAQ8WVF2 138 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 INPP5DQ92835 1189 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 PABPC5Q96DU9 382 aaKnown RBP17.24■□□□□ 0.35
USP28-208ENST00000540438 DDX50Q9BQ39 737 aaKnown RBP17.24■□□□□ 0.35
USP28-208ENST00000540438 OSER1Q9NX31 292 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 USP34Q70CQ2 3546 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 A0A0U1RQS6 177 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 PAGE1O75459 146 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 PROCP04070 461 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 MAGEA6P43360 314 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 GATMP50440 423 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 KCNA10Q16322 511 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 XKR4Q5GH76 650 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 PPM1LQ5SGD2 360 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 NXNQ6DKJ4 435 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 LRRC39Q96DD0 335 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 FCRL2Q96LA5 508 aaPredicted RBP17.24■□□□□ 0.35
USP28-208ENST00000540438 SORT1Q99523 831 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 DNAJB4Q9UDY4 337 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 TRPV2Q9Y5S1 764 aa17.24■□□□□ 0.35
USP28-208ENST00000540438 HSPA4LO95757 839 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 AXLP30530 894 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 USP10Q14694 798 aaKnown RBP17.23■□□□□ 0.35
USP28-208ENST00000540438 BZW1Q7L1Q6 419 aaKnown RBP17.23■□□□□ 0.35
USP28-208ENST00000540438 PIWIL2Q8TC59 973 aaKnown RBP17.23■□□□□ 0.35
USP28-208ENST00000540438 SMARCD1Q96GM5 515 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 OR52B2Q96RD2 323 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 PPP1R12CQ9BZL4 782 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 SLC39A8Q9C0K1 460 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 COPG2Q9UBF2 871 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 GTF2IRD1Q9UHL9 959 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 OR51F1A6NGY5 319 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 ATP5HO75947 161 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 CSPG5O95196 566 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 AKR1A1P14550 325 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 LRPAP1P30533 357 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 GP5P40197 560 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 CCNFP41002 786 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 RGS2P41220 211 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 OR1G1P47890 313 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 GLUD2P49448 558 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 SLC5A3P53794 718 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 NAGLUP54802 743 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 MPP3Q13368 585 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 ARL13BQ3SXY8 428 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 STMN2Q93045 179 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 CYP2S1Q96SQ9 504 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 FERMT1Q9BQL6 677 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 THAP1Q9NVV9 213 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 TLL2Q9Y6L7 1015 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 A0A1W2PQH9 124 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 AP2A1O95782 977 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 GABRB3P28472 473 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 TUBP50607 506 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 CFAP157Q5JU67 520 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 C1orf146Q5VVC0 180 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 SNX30Q5VWJ9 437 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 BTBD8Q5XKL5 378 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 SH3RF2Q8TEC5 729 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 EXT2Q93063 718 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 VPS39Q96JC1 886 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 EPAS1Q99814 870 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 NUF2Q9BZD4 464 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 WWP1Q9H0M0 922 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 CHST12Q9NRB3 414 aa17.23■□□□□ 0.35
USP28-208ENST00000540438 GNAT1P11488 350 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 USP46P62068 366 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 PRKCZQ05513 592 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 PAFAH1B3Q15102 231 aaKnown RBP17.22■□□□□ 0.35
USP28-208ENST00000540438 PDCD2Q16342 344 aaPredicted RBP17.22■□□□□ 0.35
USP28-208ENST00000540438 SPDYAQ5MJ70 313 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 WDR75Q8IWA0 830 aaKnown RBP17.22■□□□□ 0.35
USP28-208ENST00000540438 URGCPQ8TCY9 931 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 SMIM14Q96QK8 99 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 TRPV6Q9H1D0 765 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 LRRC40Q9H9A6 602 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 AK5Q9Y6K8 562 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 CNTN5O94779 1100 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 PEX19P40855 299 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 LHX1P48742 406 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 RPL34P49207 117 aaKnown RBP17.22■□□□□ 0.35
USP28-208ENST00000540438 RIPOR1Q6ZS17 1223 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 MARK2Q7KZI7 788 aaKnown RBP17.22■□□□□ 0.35
USP28-208ENST00000540438 NAF1Q96HR8 494 aaKnown RBP17.22■□□□□ 0.35
USP28-208ENST00000540438 COG4Q9H9E3 785 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 RBM22Q9NW64 420 aaKnown RBP eCLIP17.22■□□□□ 0.35
USP28-208ENST00000540438 NMRK1Q9NWW6 199 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 SLC7A8Q9UHI5 535 aa17.22■□□□□ 0.35
USP28-208ENST00000540438 RUVBL2Q9Y230 463 aaKnown RBP17.22■□□□□ 0.35
USP28-208ENST00000540438 APOBEC2Q9Y235 224 aaKnown RBP17.22■□□□□ 0.35
USP28-208ENST00000540438 SPECC1L-ADORA2AF8WAN1 911 aa17.21■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms