RNA–Protein interactions for RNA: ENST00000535717.1

CHD4-203, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 2

Gene CHD4, Length 660 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-203ENST00000535717 ZNF670Q9BS34 389 aa12.35□□□□□ -0.43
CHD4-203ENST00000535717 C2orf49Q9BVC5 232 aaPredicted RBP12.35□□□□□ -0.43
CHD4-203ENST00000535717 LRRC19Q9H756 370 aa12.35□□□□□ -0.43
CHD4-203ENST00000535717 CD248Q9HCU0 757 aa12.35□□□□□ -0.43
CHD4-203ENST00000535717 ATP13A1Q9HD20 1204 aa12.35□□□□□ -0.43
CHD4-203ENST00000535717 LZTFL1Q9NQ48 299 aa12.35□□□□□ -0.43
CHD4-203ENST00000535717 DDX56Q9NY93 547 aaKnown RBP12.35□□□□□ -0.43
CHD4-203ENST00000535717 DONSONQ9NYP3 566 aa12.35□□□□□ -0.43
CHD4-203ENST00000535717 SLCO3A1Q9UIG8 710 aa12.35□□□□□ -0.43
CHD4-203ENST00000535717 RAD54BQ9Y620 910 aa12.35□□□□□ -0.43
CHD4-203ENST00000535717 CAPN6Q9Y6Q1 641 aa12.35□□□□□ -0.43
CHD4-203ENST00000535717 TTC34A8MYJ7 566 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 MT-CO1P00395 513 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 TDGF1P13385 188 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 HLA-EP13747 358 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 COL9A1P20849 921 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 CTNNA1P35221 906 aaKnown RBP12.34□□□□□ -0.43
CHD4-203ENST00000535717 ETFBP38117 255 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 VASPP50552 380 aaPredicted RBP12.34□□□□□ -0.43
CHD4-203ENST00000535717 YBEYP58557 167 aaPredicted RBP12.34□□□□□ -0.43
CHD4-203ENST00000535717 ST8SIA6P61647 398 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 CSTF1Q05048 431 aaKnown RBP12.34□□□□□ -0.43
CHD4-203ENST00000535717 ANGPT1Q15389 498 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 PARP15Q460N3 678 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 IL31Q6EBC2 164 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 KIAA1211LQ6NV74 962 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 TSSK4Q6SA08 328 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 TMCO3Q6UWJ1 677 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 LINGO4Q6UY18 593 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 NT5DC3Q86UY8 548 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 ARHGAP12Q8IWW6 846 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 TP53INP2Q8IXH6 220 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 KATNAL2Q8IYT4 538 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 SYCE1Q8N0S2 351 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 PQLC3Q8N755 202 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 ZNF366Q8N895 744 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 KDM1BQ8NB78 822 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 NETO2Q8NC67 525 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 RNF25Q96BH1 459 aaPredicted RBP12.34□□□□□ -0.43
CHD4-203ENST00000535717 FAF2Q96CS3 445 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 ERLEC1Q96DZ1 483 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 HHIPQ96QV1 700 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 SLC39A8Q9C0K1 460 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 SLC25A13Q9UJS0 675 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 SLC8A2Q9UPR5 921 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 PCDHA3Q9Y5H8 950 aa12.34□□□□□ -0.43
CHD4-203ENST00000535717 MUC6Q6W4X9 2439 aa12.33□□□□□ -0.43
CHD4-203ENST00000535717 NUP205Q92621 2012 aa12.33□□□□□ -0.43
CHD4-203ENST00000535717 CACNA1HO95180 2353 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 ZNF487B1APH4 448 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 K7ERQ8 282 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 KDELR3O43731 214 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 FTCDO95954 541 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 EPHX1P07099 455 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 CTNNA2P26232 953 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 PEX5P50542 639 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 PAPOLAP51003 745 aaKnown RBP12.33□□□□□ -0.44
CHD4-203ENST00000535717 DGKEP52429 567 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 ARF5P84085 180 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 SERINC3Q13530 473 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 TAZQ16635 292 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 MFSD7Q6UXD7 560 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 PEX26Q7Z412 305 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 VSIG1Q86XK7 387 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 SH2D3CQ8N5H7 860 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 LZTR1Q8N653 840 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 RNF157Q96PX1 679 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 ZMYND15Q9H091 742 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 MTG2Q9H4K7 406 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 FBXO4Q9UKT5 387 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 AMFRQ9UKV5 643 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 HPCAL4Q9UM19 191 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 HS3ST2Q9Y278 367 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 SBDSQ9Y3A5 250 aaKnown RBP eCLIP12.33□□□□□ -0.44
CHD4-203ENST00000535717 ACTL7AQ9Y615 435 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 WDR87Q6ZQQ6 2873 aa12.33□□□□□ -0.44
CHD4-203ENST00000535717 TCRBV21S2A2A0A5A6 115 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 CCDC66A2RUB6 948 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 ARHGAP42A6NI28 874 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 DFFAO00273 331 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 SMAD6O43541 496 aaKnown RBP12.32□□□□□ -0.44
CHD4-203ENST00000535717 ATP9BO43861 1147 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 SYNCRIPO60506 623 aaKnown RBP12.32□□□□□ -0.44
CHD4-203ENST00000535717 ZRANB2O95218 330 aaKnown RBP eCLIP12.32□□□□□ -0.44
CHD4-203ENST00000535717 APBB3O95704 486 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 CD160O95971 181 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 SRCP12931 536 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 VAV1P15498 845 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 HOXA6P31267 233 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 NNMTP40261 264 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 CDKN2BP42772 138 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 PXNP49023 591 aaPredicted RBP12.32□□□□□ -0.44
CHD4-203ENST00000535717 SLC20A2Q08357 652 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 DMWDQ09019 674 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 CAMK2GQ13555 558 aaPredicted RBP12.32□□□□□ -0.44
CHD4-203ENST00000535717 STARD3Q14849 445 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 PAFAH1B3Q15102 231 aaKnown RBP12.32□□□□□ -0.44
CHD4-203ENST00000535717 DLG2Q15700 870 aa12.32□□□□□ -0.44
CHD4-203ENST00000535717 HNRNPA1L2Q32P51 320 aaKnown RBP12.32□□□□□ -0.44
CHD4-203ENST00000535717 ODF2Q5BJF6 829 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms