RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 RBMS2Q15434 407 aaKnown RBP4.43□□□□□ -1.7
CD44-235ENST00000532339 TWIST1Q15672 202 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 NPY5RQ15761 445 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 ZNF750Q32MQ0 723 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 INO80DQ53TQ3 878 aaPredicted RBP4.43□□□□□ -1.7
CD44-235ENST00000532339 DGKKQ5KSL6 1271 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 RANBP10Q6VN20 620 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 SESTD1Q86VW0 696 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 YAF2Q8IY57 180 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 NRACQ8N912 160 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 POF1BQ8WVV4 589 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 BADQ92934 168 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 EVI5LQ96CN4 794 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 WDYHV1Q96HA8 205 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 ZCWPW1Q9H0M4 648 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 FAM83DQ9H4H8 585 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 PPCSQ9HAB8 311 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 MTMR4Q9NYA4 1195 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 NKX1-2Q9UD57 310 aaPredicted RBP4.43□□□□□ -1.7
CD44-235ENST00000532339 LTBP2Q14767 1821 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 DUOX1Q9NRD9 1551 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 ABCC4O15439 1325 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 DMXL1Q9Y485 3027 aa4.43□□□□□ -1.7
CD44-235ENST00000532339 COL4A6Q14031 1691 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 A8MVJ9 347 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 F8W8V4 182 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 RAB27BO00194 218 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 ADAM10O14672 748 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 INSIG1O15503 277 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 INMTO95050 263 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 PARP1P09874 1014 aaKnown RBP4.42□□□□□ -1.7
CD44-235ENST00000532339 TXNP10599 105 aaKnown RBP4.42□□□□□ -1.7
CD44-235ENST00000532339 TNNT2P45379 298 aaPredicted RBP4.42□□□□□ -1.7
CD44-235ENST00000532339 FMO1Q01740 532 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 ID2Q02363 134 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 BTKQ06187 659 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 MYO9BQ13459 2157 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 ZRSR2Q15696 482 aaKnown RBP4.42□□□□□ -1.7
CD44-235ENST00000532339 TUBB8Q3ZCM7 444 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 AWAT1Q58HT5 328 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 C3orf38Q5JPI3 329 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 TMTC4Q5T4D3 741 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 ZNF517Q6ZMY9 492 aaPredicted RBP4.42□□□□□ -1.7
CD44-235ENST00000532339 DEF8Q6ZN54 512 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 DNAH12Q6ZR08 3092 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 ADSSL1Q8N142 457 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 RNF152Q8N8N0 203 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 ACRBPQ8NEB7 543 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 IPCEF1Q8WWN9 437 aaPredicted RBP4.42□□□□□ -1.7
CD44-235ENST00000532339 KIAA1191Q96A73 305 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 MSLNLQ96KJ4 702 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 SIGLEC11Q96RL6 698 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 EYA3Q99504 573 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 CRB3Q9BUF7 120 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 SELENOOQ9BVL4 669 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 DEFB129Q9H1M3 183 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 STARD7Q9NQZ5 370 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 SNX13Q9Y5W8 968 aa4.42□□□□□ -1.7
CD44-235ENST00000532339 IBTKQ9P2D0 1353 aaPredicted RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 MAST2Q6P0Q8 1798 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 F5H423 210 aaPredicted RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 FOXN3O00409 490 aaPredicted RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 SNHG28P0DPA3 235 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 PRF1P14222 555 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 TPH1P17752 444 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 ABCB4P21439 1286 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 HOXD9P28356 352 aaPredicted RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 NBL1P41271 181 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 STT3AP46977 705 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 MMP14P50281 582 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 KRTAP10-9P60411 292 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 RPS16P62249 146 aaKnown RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 HTRA4P83105 476 aaPredicted RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 ZNF91Q05481 1191 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 DAG1Q14118 895 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 CC2D1BQ5T0F9 858 aaKnown RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 IZUMO3Q5VZ72 239 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 MZT2AQ6P582 158 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 CCDC129Q6ZRS4 1044 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 IRF2BP2Q7Z5L9 587 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 SUGP1Q8IWZ8 645 aaKnown RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 C12orf76Q8N812 135 aaPredicted RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 PNPLA1Q8N8W4 532 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 VPS50Q96JG6 964 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 FSD1Q9BTV5 496 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 KRTAP1-5Q9BYS1 174 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 UNKQ9C0B0 810 aaKnown RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 WDR12Q9GZL7 423 aaKnown RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 CERS4Q9HA82 394 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 ZNF287Q9HBT7 754 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 COL20A1Q9P218 1284 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 CHD7Q9P2D1 2997 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 STEAP1Q9UHE8 339 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 MID2Q9UJV3 735 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 RIMKLBQ9ULI2 386 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 GAKO14976 1311 aa4.41□□□□□ -1.7
CD44-235ENST00000532339 DDX60Q8IY21 1712 aaKnown RBP4.41□□□□□ -1.7
CD44-235ENST00000532339 ZMYM2Q9UBW7 1377 aa4.4□□□□□ -1.7
CD44-235ENST00000532339 HEG1Q9ULI3 1381 aa4.4□□□□□ -1.7
CD44-235ENST00000532339 LY6G6EA0A0G2JKS1 128 aa4.4□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms