RNA–Protein interactions for RNA: ENST00000516665.1

RNU6-539P-201, Transcript of RNA, U6 small nuclear 539, pseudogene, humanhuman

BASIC

Gene RNU6-539P, Length 103 nt, Biotype snRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU6-539P-201ENST00000516665 TXNL4AP83876 142 aaKnown RBP-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 SLC20A2Q08357 652 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 SNAPC2Q13487 334 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 CALCRLQ16602 461 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 ADAMTSL4-AS1Q5T5F5 129 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 MAP3K21Q5TCX8 1036 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 VITQ6UXI7 678 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 ATF7IPQ6VMQ6 1270 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 NEK10Q6ZWH5 1172 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 RASSF3Q86WH2 238 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 CAMK1DQ8IU85 385 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 ZC3H3Q8IXZ2 948 aaKnown RBP-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 GPD1LQ8N335 351 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 METTL27Q8N6F8 245 aaPredicted RBP-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 METTL25Q8N6Q8 603 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 SMC1BQ8NDV3 1235 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 PPHLN1Q8NEY8 458 aaKnown RBP-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 TGFBRAP1Q8WUH2 860 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 C2orf48Q96LS8 159 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 ZNF583Q96ND8 569 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 GPR101Q96P66 508 aaPredicted RBP-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 ZNF670Q9BS34 389 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 PUS3Q9BZE2 481 aaKnown RBP-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 KLHL31Q9H511 634 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 ZNF304Q9HCX3 659 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 KLHL1Q9NR64 748 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 INTUQ9ULD6 942 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 SHOC2Q9UQ13 582 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 C2CD2Q9Y426 696 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 MYO10Q9HD67 2058 aa-0.63□□□□□ -2.51
RNU6-539P-201ENST00000516665 IGLV7-46A0A075B6I9 117 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 A0A0G2JPF8 293 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 HNRNPCL3B7ZW38 293 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 KCNN4O15554 427 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 KLF4O43474 513 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 CEP104O60308 925 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 HNRNPCL1O60812 293 aaKnown RBP-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 RAPGEF3O95398 923 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 CLDN14O95500 239 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 HNRNPCL4P0DMR1 293 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 IGHV4-30-4P0DP06 118 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 MALP21145 153 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 ADRA1DP25100 572 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 NDUFS1P28331 727 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 HOXC8P31273 242 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 PIK3CGP48736 1102 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 CPT1AP50416 773 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 CCDC15Q0P6D6 951 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 PMPCAQ10713 525 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 CTTNQ14247 550 aaKnown RBP-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 MYBPC2Q14324 1141 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 CFAP100Q494V2 611 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 MTERF2Q49AM1 385 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 SLC27A1Q6PCB7 646 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 BHLHB9Q6PI77 547 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 SLC4A10Q6U841 1118 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 FRRS1Q6ZNA5 592 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 UBE2R2Q712K3 238 aaPredicted RBP-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 CMIPQ8IY22 773 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 SLC25A41Q8N5S1 370 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 STPG4Q8N801 248 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 BICD2Q8TD16 824 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 SSC4DQ8WTU2 575 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 NRG4Q8WWG1 115 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 STAMQ92783 540 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 BCANQ96GW7 911 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 VRK1Q99986 396 aaPredicted RBP-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 LRRC61Q9BV99 259 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 LDHAL6BQ9BYZ2 381 aaPredicted RBP-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 SAP30LQ9HAJ7 183 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 SMARCAL1Q9NZC9 954 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 USP22Q9UPT9 525 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 TNNQ9UQP3 1299 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 FAT4Q6V0I7 4981 aa-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 ZFHX2Q9C0A1 2572 aaPredicted RBP-0.64□□□□□ -2.51
RNU6-539P-201ENST00000516665 ASPDHA6ND91 283 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 EXOC5O00471 708 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 ITM2AO43736 263 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 LY6G6DO95868 133 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 IGKV1-17P01599 117 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 TMIGD3P0DMS9 266 aaPredicted RBP-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 CEACAM1P13688 526 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 FOLR2P14207 255 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 VIPR2P41587 438 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 BMXP51813 675 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 PRKAG1P54619 331 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 PITX1P78337 314 aaPredicted RBP-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 SRSF2Q01130 221 aaKnown RBP-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 EWSR1Q01844 656 aaKnown RBP eCLIP-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 SPOCK1Q08629 439 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 EBI3Q14213 229 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 ANXA2RQ3ZCQ2 193 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 TOR2AQ5JU69 321 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 CERCAMQ5T4B2 595 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 FAM69BQ5VUD6 431 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 TYW3Q6IPR3 259 aaKnown RBP-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 TRIM65Q6PJ69 517 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 FAM90A1Q86YD7 464 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 SPATA22Q8NHS9 363 aa-0.65□□□□□ -2.51
RNU6-539P-201ENST00000516665 TM9SF4Q92544 642 aa-0.65□□□□□ -2.51
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms