RNA–Protein interactions for RNA: ENST00000506880.5

PDGFC-205, Transcript of platelet derived growth factor C, humanhuman

TSL 2

Gene PDGFC, Length 1,014 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-205ENST00000506880 KDM4CQ9H3R0 1056 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 EPHX3Q9H6B9 360 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 ANLNQ9NQW6 1124 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 PCSK1NQ9UHG2 260 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 MFHAS1Q9Y4C4 1052 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 MUC6Q6W4X9 2439 aa8.66□□□□□ -1.02
PDGFC-205ENST00000506880 GOLGA6L7A0A1B0GV03 622 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 GRID2IPA4D2P6 1211 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 APOC4-APOC2K7ER74 178 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 KIF2AO00139 706 aaPredicted RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 SLC7A4O43246 635 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 CREB3O43889 395 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 KIF5CO60282 957 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 SYNCRIPO60506 623 aaKnown RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 FOXD2O60548 495 aaPredicted RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 TSPAN3O60637 253 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 PRAMEF11O60813 436 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 RNF40O75150 1001 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 ZMPSTE24O75844 475 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 GJB6O95452 261 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 ADH1BP00325 375 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 GSRP00390 522 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 EGFP01133 1207 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 APOC2P02655 101 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 PRNPP04156 253 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 PRLRP16471 622 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 GOT1P17174 413 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 CCNCP24863 283 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 OXTRP30559 389 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 CSKP41240 450 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 SSR1P43307 286 aaKnown RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 RECQLP46063 649 aaPredicted RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 SERPINH1P50454 418 aaKnown RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 PEX5P50542 639 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 ATXN1P54253 815 aaKnown RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 PTPN5P54829 565 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 GALNT2Q10471 571 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 HNRNPDQ14103 355 aaKnown RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 GEN1Q17RS7 908 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 ALFQ53S48 1182 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 ANKRD20A8PQ5CZ79 823 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 PPP6R3Q5H9R7 873 aaPredicted RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 SERPINA13PQ6UXR4 307 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 PHLDB2Q86SQ0 1253 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 C14orf80Q86SX3 495 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 RASSF3Q86WH2 238 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 GPIHBP1Q8IV16 184 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 CHPFQ8IZ52 775 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 SH2D3CQ8N5H7 860 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 ACRBPQ8NEB7 543 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 TTC16Q8NEE8 873 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 TMIEQ8NEW7 156 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 TUBGCP5Q96RT8 1024 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 CALN1Q9BXU9 219 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 CPEB1Q9BZB8 566 aaKnown RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 ATP13A1Q9HD20 1204 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 PLK2Q9NYY3 685 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 RNF14Q9UBS8 474 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 TTC7AQ9ULT0 858 aaPredicted RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 NDRG2Q9UN36 371 aaKnown RBP8.65□□□□□ -1.02
PDGFC-205ENST00000506880 ERVW-1Q9UQF0 538 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 HCN4Q9Y3Q4 1203 aa8.65□□□□□ -1.02
PDGFC-205ENST00000506880 LRRD1A4D1F6 860 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 CFAP69A5D8W1 941 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 RCCD1A6NED2 376 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 C3orf70A6NLC5 250 aaPredicted RBP8.64□□□□□ -1.03
PDGFC-205ENST00000506880 WASH3PC4AMC7 463 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 RASA4BC9J798 803 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 PRRT4C9JH25 899 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 C1QTNF3-AMACRE9PGA6 284 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 FAM72CH0Y354 149 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 APOL1O14791 398 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 MCF2LO15068 1137 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 RASA4O43374 803 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 CNTN5O94779 1100 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 HOXB2P14652 356 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 CA4P22748 312 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 IL4RP24394 825 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 CD70P32970 193 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 HOXD12P35452 270 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 GARSP41250 739 aaKnown RBP8.64□□□□□ -1.03
PDGFC-205ENST00000506880 CDKN2BP42772 138 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 SLC6A11P48066 632 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 SOX9P48436 509 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 SGSHP51688 502 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 VCPP55072 806 aaKnown RBP8.64□□□□□ -1.03
PDGFC-205ENST00000506880 SNRPD1P62314 119 aaKnown RBP8.64□□□□□ -1.03
PDGFC-205ENST00000506880 ZNF234Q14588 700 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 PTPRNQ16849 979 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 FUT11Q495W5 492 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 TTC31Q49AM3 519 aaPredicted RBP8.64□□□□□ -1.03
PDGFC-205ENST00000506880 FNDC3BQ53EP0 1204 aaKnown RBP8.64□□□□□ -1.03
PDGFC-205ENST00000506880 ZFYVE27Q5T4F4 411 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 MEI1Q5TIA1 1274 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 FAM72AQ5TYM5 149 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 ARMC3Q5W041 872 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 IL31Q6EBC2 164 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 ALG1LQ6GMV1 187 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 FAM72DQ6L9T8 149 aa8.64□□□□□ -1.03
PDGFC-205ENST00000506880 C4orf22Q6V702 233 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms