RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 ATICP31939 592 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CSRP3P50461 194 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 BCAP31P51572 246 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 CSE1LP55060 971 aaKnown RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 GBE1Q04446 702 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 RAB6CQ53S08 254 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 SLC27A3Q5K4L6 730 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 INTS11Q5TA45 600 aaKnown RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 ITPRIPL1Q6GPH6 555 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 OR6B2Q6IFH4 312 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TNS4Q8IZW8 715 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 TTC39CQ8N584 583 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 NSUN6Q8TEA1 469 aaKnown RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 LRTOMTQ8WZ04 291 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 PBXIP1Q96AQ6 731 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 AKT1S1Q96B36 256 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 MAF1Q9H063 256 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 RAB6CQ9H0N0 254 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF302Q9NR11 478 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 ARMC1Q9NVT9 282 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF358Q9NW07 568 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 NXF1Q9UBU9 619 aaKnown RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 EBF1Q9UH73 591 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 B3GNT3Q9Y2A9 372 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 PCDHGA7Q9Y5G6 932 aa9.86□□□□□ -0.83
SYNE1-230ENST00000495090 HEMK1Q9Y5R4 338 aaPredicted RBP9.86□□□□□ -0.83
SYNE1-230ENST00000495090 KIAA1217Q5T5P2 1943 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 FER1L6Q2WGJ9 1857 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 FBP2O00757 339 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 IL18RAPO95256 599 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 SDC4P31431 198 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 MSX2P35548 267 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-230ENST00000495090 RAP1GAPP47736 663 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 SLC5A3P53794 718 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 C21orf59P57076 290 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 PSME3P61289 254 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 STX5Q13190 355 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 TARBP2Q15633 366 aaKnown RBP9.85□□□□□ -0.83
SYNE1-230ENST00000495090 MOGQ16653 247 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 CA9Q16790 459 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 CDO1Q16878 200 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 CCDC92Q53HC0 331 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-230ENST00000495090 FSTL4Q6MZW2 842 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 NIPAL1Q6NVV3 410 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 SCYL2Q6P3W7 929 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 LCLAT1Q6UWP7 414 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 OLFML1Q6UWY5 402 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 LYSMD3Q7Z3D4 306 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 CMC1Q7Z7K0 106 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 HERC6Q8IVU3 1022 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 MYO1HQ8N1T3 1032 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 TBC1D15Q8TC07 691 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 URGCPQ8TCY9 931 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 SLCO4A1Q96BD0 722 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 PGBD4Q96DM1 585 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 THAP11Q96EK4 314 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 ABHD8Q96I13 439 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 PLEKHA8Q96JA3 519 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 TWNKQ96RR1 684 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 TCHPQ9BT92 498 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 TDRD1Q9BXT4 1180 aaKnown RBP9.85□□□□□ -0.83
SYNE1-230ENST00000495090 TRPV6Q9H1D0 765 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 RPF2Q9H7B2 306 aaKnown RBP9.85□□□□□ -0.83
SYNE1-230ENST00000495090 LRRC40Q9H9A6 602 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 MRM3Q9HC36 420 aaKnown RBP9.85□□□□□ -0.83
SYNE1-230ENST00000495090 NGRNQ9NPE2 291 aaKnown RBP9.85□□□□□ -0.83
SYNE1-230ENST00000495090 GPATCH2LQ9NWQ4 482 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 SYBUQ9NX95 663 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 HESX1Q9UBX0 185 aa9.85□□□□□ -0.83
SYNE1-230ENST00000495090 ZNF70Q9UC06 446 aaPredicted RBP9.85□□□□□ -0.83
SYNE1-230ENST00000495090 COPG1Q9Y678 874 aaKnown RBP9.85□□□□□ -0.83
SYNE1-230ENST00000495090 IGKV6D-21A0A0A0MT36 114 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 HEATR9A2RTY3 570 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 TRPC5OSA6NMA1 111 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 STX16-NPEPL1H3BU86 382 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 NEMP1O14524 444 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 AKAP10O43572 662 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 MAP3K6O95382 1288 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 PIGNO95427 931 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 AMHP03971 560 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CHRNGP07510 517 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 OCM2P0CE71 109 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 OCMP0CE72 109 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ERVK-10P10266 1014 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 PTPN9P43378 593 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 GRIA4P48058 902 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 NME5P56597 212 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 SESN2P58004 480 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CRADDP78560 199 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 CTBSQ01459 385 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 INCA1Q0VD86 236 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 BAATQ14032 418 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 KIZQ2M2Z5 673 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ARL13AQ5H913 290 aaPredicted RBP9.84□□□□□ -0.83
SYNE1-230ENST00000495090 MTX3Q5HYI7 312 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 HACD2Q6Y1H2 254 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ZBTB49Q6ZSB9 765 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ZBTB33Q86T24 672 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 ZDHHC17Q8IUH5 632 aa9.84□□□□□ -0.83
SYNE1-230ENST00000495090 PELI3Q8N2H9 469 aa9.84□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms