RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 PQLC1Q8N2U9 271 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 FBXW8Q8N3Y1 598 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 ARRDC4Q8NCT1 418 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 DOLKQ9UPQ8 538 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 DMTF1Q9Y222 760 aa16.58■□□□□ 0.25
CCDC88B-209ENST00000494080 GLTPD2A6NH11 291 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 CKMP06732 381 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 ITGAVP06756 1048 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 PSMB4P28070 264 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 CD52P31358 61 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 NME5P56597 212 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 PLEKHO2Q8TD55 490 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 ZFAND2BQ8WV99 257 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 PPP1R2P1Q96PQ5 205 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 PDZD7Q9H5P4 517 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 SMPD4Q9NXE4 827 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 LYPLA1O75608 230 aaPredicted RBP16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 TRMUO75648 421 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 CLK1P49759 484 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 TBCELQ5QJ74 424 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 C6orf10Q5SRN2 563 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 MARC1Q5VT66 337 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 PTRHD1Q6GMV3 140 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 OLA1Q9NTK5 396 aaKnown RBP16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 ACOT9Q9Y305 439 aa16.58■□□□□ 0.24
CCDC88B-209ENST00000494080 SMIM28A0A1B0GU29 152 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 HEATR9A2RTY3 570 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 ZNF839A8K0R7 811 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 VAPBO95292 243 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 ARIH2O95376 493 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 ITGA2BP08514 1039 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 COX4I1P13073 169 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 FSTL1Q12841 308 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 TIGD7Q6NT04 549 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 KYAT3Q6YP21 454 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 CCDC81Q6ZN84 652 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 TMEM192Q8IY95 271 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 NDRG1Q92597 394 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 SPTLC1O15269 473 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 TRIM13O60858 407 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 CILPO75339 1184 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 DLGAP3O95886 979 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 DARSP14868 501 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 PTPN7P35236 360 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 GPAMQ9HCL2 828 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 ADGRA2Q96PE1 1338 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 LAMB4A4D0S4 1761 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 ERVK-10P10266 1014 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 AKT1P31749 480 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 GP5P40197 560 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 TBX4P57082 545 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 CBX3Q13185 183 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 LPIN1Q14693 890 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 MAPK11Q15759 364 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 FAM110CQ1W6H9 321 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 ILDR2Q71H61 639 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 PCDH20Q8N6Y1 951 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 TNIP2Q8NFZ5 429 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 MRGBPQ9NV56 204 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 DNAAF2Q9NVR5 837 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 PCDHB5Q9Y5E4 795 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 CBX4O00257 560 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 MRPS6P82932 125 aaKnown RBP16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 CDH17Q12864 832 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 BFSP2Q13515 415 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 CSHL1Q14406 222 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 LRRC52Q8N7C0 313 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 SEPT8Q92599 483 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 TRIM54Q9BYV2 358 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 WDR41Q9HAD4 459 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 CD274Q9NZQ7 290 aa16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 FARP1Q9Y4F1 1045 aaPredicted RBP16.57■□□□□ 0.24
CCDC88B-209ENST00000494080 A0A0G2JLL6 359 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 TBKBP1A7MCY6 615 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 VNN1O95497 513 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 CCDC159P0C7I6 412 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 AQP4P55087 323 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 MBTD1Q05BQ5 628 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 PRRT2Q7Z6L0 340 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 HEATR4Q86WZ0 1026 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 OR52K1Q8NGK4 314 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 TXNRD2Q9NNW7 524 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 GOLGA4Q13439 2230 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 APOA4P06727 396 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 XIAPP98170 497 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 MPP2Q14168 576 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 CAPRIN1Q14444 709 aaKnown RBP16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 C9orf57Q5W0N0 161 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 CCDC103Q8IW40 242 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 DCUN1D1Q96GG9 259 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 APBA2Q99767 749 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 C6orf203Q9P0P8 240 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 IPPQ9Y573 584 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 BRCC3P46736 316 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 MTTPP55157 894 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 MRNIPQ6NTE8 343 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 C12orf50Q8NA57 414 aaPredicted RBP16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 TEPSINQ96N21 525 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 LHX5Q9H2C1 402 aa16.56■□□□□ 0.24
CCDC88B-209ENST00000494080 TMA7Q9Y2S6 64 aaKnown RBP16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms