RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 TAS2R50P59544 299 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 B4GALNT1Q00973 533 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 GAD2Q05329 585 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 DMWDQ09019 674 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 SF3A3Q12874 501 aaKnown RBP eCLIP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 MTX1Q13505 466 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 IDI1Q13907 227 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 UBE4AQ14139 1066 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 PTK2BQ14289 1009 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 GALNT3Q14435 633 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 PUM3Q15397 648 aaKnown RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 TWIST1Q15672 202 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 PFKFB4Q16877 469 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 TBRG1Q3YBR2 411 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 ZACNQ401N2 412 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 C10orf76Q5T2E6 689 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 DAB2IPQ5VWQ8 1189 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 TMED8Q6PL24 325 aaPredicted RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 LVRNQ6Q4G3 990 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 TOGARAM2Q6ZUX3 1019 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 RAB11FIP2Q7L804 512 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 RFX6Q8HWS3 928 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 NRACQ8N912 160 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 ATG16L2Q8NAA4 619 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 VPS37AQ8NEZ2 397 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 FAM71BQ8TC56 605 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 STYXQ8WUJ0 223 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 ZFPM2Q8WW38 1151 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 CPT1BQ92523 772 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 RUBCNQ92622 972 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 RSC1A1Q92681 617 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 ZBTB9Q96C00 473 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 RTKNQ9BST9 563 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 WDR12Q9GZL7 423 aaKnown RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 TP63Q9H3D4 680 aaPredicted RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 ELAC1Q9H777 363 aaKnown RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 AAMDCQ9H7C9 122 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 KCNK9Q9NPC2 374 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 OBP2BQ9NPH6 170 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 PLCB1Q9NQ66 1216 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 IGSF9Q9P2J2 1179 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 HEY2Q9UBP5 337 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 HERC5Q9UII4 1024 aaKnown RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 SLC25A13Q9UJS0 675 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 DAAM1Q9Y4D1 1078 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 CFAP65Q6ZU64 1925 aaKnown RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 LAMC1P11047 1609 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 TECPR2O15040 1411 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 RRBP1Q9P2E9 1410 aaKnown RBP2.42□□□□□ -2.02
HMGB1-208ENST00000490788 FANCIQ9NVI1 1328 aa2.42□□□□□ -2.02
HMGB1-208ENST00000490788 PXDNQ92626 1479 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 IGLV5-39A0A0G2JS06 123 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 ABHD14A-ACY1A0A1B0GW23 586 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 LGALS16A8MUM7 142 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 B4DGG1 531 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 M0QYT0 321 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 M0QZQ0 153 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 RHODO00212 210 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 CNOT3O75175 753 aaKnown RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 ACTL6BO94805 426 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 TNFRSF6BO95407 300 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 CRYABP02511 175 aaKnown RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 ALDOCP09972 364 aaKnown RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 PSG1P11464 419 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 CHRNA5P30532 468 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 STAT1P42224 750 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 HTR3AP46098 478 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 SOX2P48431 317 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 OAZ1P54368 228 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 RPL15P61313 204 aaKnown RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 AP2B1P63010 937 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 SHC2P98077 582 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 CHAF1AQ13111 956 aaPredicted RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 BLMHQ13867 455 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 PDCD2Q16342 344 aaPredicted RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 PRTGQ2VWP7 1150 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 BTBD16Q32M84 506 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 CCDC38Q502W7 563 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 C6orf10Q5SRN2 563 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 ERAP2Q6P179 960 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 NFRKBQ6P4R8 1299 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 ANKS1BQ7Z6G8 1248 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 IGFN1Q86VF2 1251 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 MMP21Q8N119 569 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 TMEM199Q8N511 208 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 SAMD3Q8N6K7 520 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 ZNF548Q8NEK5 533 aaPredicted RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 LPAR1Q92633 364 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 SLC25A28Q96A46 364 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 C3orf49Q96BT1 292 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 MCRS1Q96EZ8 462 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 CAPNS2Q96L46 248 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 ADAD1Q96M93 576 aaKnown RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 PAGR1Q9BTK6 254 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 CRB3Q9BUF7 120 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 FAM234AQ9H0X4 552 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 OSBPL5Q9H0X9 879 aaPredicted RBP2.41□□□□□ -2.02
HMGB1-208ENST00000490788 TASP1Q9H6P5 420 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 FZD3Q9NPG1 666 aa2.41□□□□□ -2.02
HMGB1-208ENST00000490788 MTPAPQ9NVV4 582 aaKnown RBP eCLIP2.41□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms