RNA–Protein interactions for RNA: ENST00000489403.1

CPSF3-204, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 5

Gene CPSF3, Length 688 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-204ENST00000489403 C11orf57Q6ZUT1 292 aaPredicted RBP12.74□□□□□ -0.37
CPSF3-204ENST00000489403 DSG4Q86SJ6 1040 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 C14orf80Q86SX3 495 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 IQCHQ86VS3 1027 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 SH2D3CQ8N5H7 860 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 PIP4K2CQ8TBX8 421 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 SHC3Q92529 594 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 NXPE2Q96DL1 559 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 FEM1AQ9BSK4 669 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 APEX2Q9UBZ4 518 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 AJAP1Q9UKB5 411 aaPredicted RBP12.74□□□□□ -0.37
CPSF3-204ENST00000489403 PPM1HQ9ULR3 514 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 DMTF1Q9Y222 760 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 ATRXP46100 2492 aa12.74□□□□□ -0.37
CPSF3-204ENST00000489403 URB1O60287 2271 aaKnown RBP12.73□□□□□ -0.37
CPSF3-204ENST00000489403 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.73□□□□□ -0.37
CPSF3-204ENST00000489403 MCF2LO15068 1137 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 BNIP3LO60238 219 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 PAGE1O75459 146 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 CTSLP07711 333 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 CDK4P11802 303 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 NUDT1P36639 197 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 TAS2R38P59533 333 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 TARDBPQ13148 414 aaKnown RBP eCLIP12.73□□□□□ -0.37
CPSF3-204ENST00000489403 ZNF177Q13360 481 aaPredicted RBP12.73□□□□□ -0.37
CPSF3-204ENST00000489403 BECN1Q14457 450 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 EXOC3L4Q17RC7 722 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 C5orf22Q49AR2 442 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 C6orf118Q5T5N4 469 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 FBXL19Q6PCT2 694 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 GBP6Q6ZN66 633 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 SLC26A9Q7LBE3 791 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 CREBRFQ8IUR6 639 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 DCBLD2Q96PD2 775 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 PPP1R9BQ96SB3 815 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 PSMB7Q99436 277 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 PREBQ9HCU5 417 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 ANLNQ9NQW6 1124 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 RWDD2AQ9UIY3 292 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 VPS28Q9UK41 221 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 CA5BQ9Y2D0 317 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 TBC1D30Q9Y2I9 924 aa12.73□□□□□ -0.37
CPSF3-204ENST00000489403 PRAMEF26H0Y7S4 382 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 I6L893 689 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-204ENST00000489403 M0QYT0 321 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 TLX3O43711 291 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-204ENST00000489403 MAGEC1O60732 1142 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 SDC3O75056 442 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 CLDN11O75508 207 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 CNTN5O94779 1100 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 PNMA6AP0CW24 399 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-204ENST00000489403 SRCP12931 536 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 ZNF18P17022 549 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 TFE3P19532 575 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-204ENST00000489403 PON1P27169 355 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 NOS2P35228 1153 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 ABCG1P45844 678 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 CDH4P55283 916 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 SLC6A3Q01959 620 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 PTK2Q05397 1052 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 OVGP1Q12889 678 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 MTA1Q13330 715 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 STAT4Q14765 748 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 SETMARQ53H47 684 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-204ENST00000489403 ALFQ53S48 1182 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 PIP5KL1Q5T9C9 394 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 ZNF397Q8NF99 534 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-204ENST00000489403 SIK2Q9H0K1 926 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 SIX2Q9NPC8 291 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 PLCB1Q9NQ66 1216 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 PIGVQ9NUD9 493 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 ARHGEF38Q9NXL2 777 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 HS3ST2Q9Y278 367 aa12.72□□□□□ -0.37
CPSF3-204ENST00000489403 ARID1BQ8NFD5 2236 aaPredicted RBP12.72□□□□□ -0.37
CPSF3-204ENST00000489403 GTPBP10A4D1E9 387 aaKnown RBP12.71□□□□□ -0.37
CPSF3-204ENST00000489403 K7ERQ8 282 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 RNF103O00237 685 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 SNAP91O60641 907 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 RNGTTO60942 597 aaKnown RBP12.71□□□□□ -0.37
CPSF3-204ENST00000489403 ADCY5O95622 1261 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 MT-CO1P00395 513 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 RHOCP08134 193 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 CKMT2P17540 419 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 ACP1P24666 158 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 CLCN1P35523 988 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 ILKQ13418 452 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 RTP5Q14D33 572 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 PROX2Q3B8N5 592 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 BRMS1LQ5PSV4 323 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 SLC47A2Q86VL8 602 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 IRF2BP1Q8IU81 584 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 ZNF683Q8IZ20 524 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 TMEM145Q8NBT3 493 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 KLK6Q92876 244 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 ARRDC3Q96B67 414 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 NOX5Q96PH1 765 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 NPY6RQ99463 290 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 MYOCQ99972 504 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 NRSN2Q9GZP1 204 aa12.71□□□□□ -0.37
CPSF3-204ENST00000489403 TKTL2Q9H0I9 626 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms