RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 ADCY5O95622 1261 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 MAT2AP31153 395 aaKnown RBP20.28■□□□□ 0.84
COL9A3-210ENST00000472880 NUDT1P36639 197 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 CXCR3P49682 368 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 NXPH1P58417 271 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 KRT83P78385 493 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 DEUP1Q05D60 604 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 CNTN1Q12860 1018 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 DRAP1Q14919 205 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-210ENST00000472880 DPCR1Q3MIW9 517 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 POM121L1PQ3SYA9 428 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 C5orf22Q49AR2 442 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 MIIPQ5JXC2 388 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 FAM102AQ5T9C2 384 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-210ENST00000472880 OXR1Q8N573 874 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 CCDC114Q96M63 670 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 C2orf49Q9BVC5 232 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-210ENST00000472880 DMTF1Q9Y222 760 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 FARP1Q9Y4F1 1045 aaPredicted RBP20.28■□□□□ 0.84
COL9A3-210ENST00000472880 FHOD1Q9Y613 1164 aa20.28■□□□□ 0.84
COL9A3-210ENST00000472880 TLR4O00206 839 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 MCF2LO15068 1137 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 CNTN5O94779 1100 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 F9P00740 461 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 CYP11B1P15538 503 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 TFE3P19532 575 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-210ENST00000472880 ERCC5P28715 1186 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-210ENST00000472880 EPHA8P29322 1005 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-210ENST00000472880 CDH5P33151 784 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-210ENST00000472880 SCNN1AP37088 669 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 AGBL4Q5VU57 503 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 TAF3Q5VWG9 929 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 DHRS13Q6UX07 377 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 LRRC31Q6UY01 552 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 TRIM69Q86WT6 500 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 ATP11CQ8NB49 1132 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 MSANTD4Q8NCY6 345 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 SAP25Q8TEE9 199 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 C18orf8Q96DM3 657 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 PGAP3Q96FM1 320 aaPredicted RBP20.27■□□□□ 0.84
COL9A3-210ENST00000472880 TBCBQ99426 244 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 PPM1HQ9ULR3 514 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 HS3ST2Q9Y278 367 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 KNL1Q8NG31 2342 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 CABIN1Q9Y6J0 2220 aa20.27■□□□□ 0.84
COL9A3-210ENST00000472880 ENC1O14682 589 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 MAGEC1O60732 1142 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 LDOC1O95751 146 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-210ENST00000472880 SRCP12931 536 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 GABRB2P47870 512 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 SHBQ15464 509 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 SMAD1Q15797 465 aaKnown RBP20.26■□□□□ 0.83
COL9A3-210ENST00000472880 SETMARQ53H47 684 aaPredicted RBP20.26■□□□□ 0.83
COL9A3-210ENST00000472880 ALFQ53S48 1182 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 KLHDC7AQ5VTJ3 777 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 ERICH1Q86X53 443 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 MFSD2AQ8NA29 543 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 CNDP2Q96KP4 475 aaKnown RBP20.26■□□□□ 0.83
COL9A3-210ENST00000472880 TMEM51Q9NW97 253 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 ARHGAP20Q9P2F6 1191 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 VPS51Q9UID3 782 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 SNX10Q9Y5X0 201 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 FREM2Q5SZK8 3169 aa20.26■□□□□ 0.83
COL9A3-210ENST00000472880 DMXL2Q8TDJ6 3036 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 FAM170AA1A519 330 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 FAM149AA5PLN7 773 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 SNAP91O60641 907 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 LSM8O95777 96 aaKnown RBP20.25■□□□□ 0.83
COL9A3-210ENST00000472880 STAT4Q14765 748 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 SLC25A52Q3SY17 297 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 C6orf118Q5T5N4 469 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 ACBD5Q5T8D3 534 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-210ENST00000472880 DPY19L2P1Q6NXN4 242 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 TFAP2DQ7Z6R9 452 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 SETD3Q86TU7 594 aaPredicted RBP20.25■□□□□ 0.83
COL9A3-210ENST00000472880 IQCHQ86VS3 1027 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 XYLT1Q86Y38 959 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 MARCH9Q86YJ5 346 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 EID2Q8N6I1 236 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 DCAF4L2Q8NA75 395 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 NT5C3BQ969T7 300 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 PSMB7Q99436 277 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 NUP62CLQ9H1M0 184 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 ERVMER34-1Q9H9K5 563 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 PREBQ9HCU5 417 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 ANLNQ9NQW6 1124 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 PCDHGA1Q9Y5H4 931 aa20.25■□□□□ 0.83
COL9A3-210ENST00000472880 GOLGA8SH3BPF8 625 aa20.24■□□□□ 0.83
COL9A3-210ENST00000472880 I6L893 689 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-210ENST00000472880 KPNA3O00505 521 aaPredicted RBP20.24■□□□□ 0.83
COL9A3-210ENST00000472880 MT-CO1P00395 513 aa20.24■□□□□ 0.83
COL9A3-210ENST00000472880 KCNMA1Q12791 1236 aa20.24■□□□□ 0.83
COL9A3-210ENST00000472880 OVGP1Q12889 678 aa20.24■□□□□ 0.83
COL9A3-210ENST00000472880 ZNF683Q8IZ20 524 aa20.24■□□□□ 0.83
COL9A3-210ENST00000472880 DYRK4Q9NR20 520 aa20.24■□□□□ 0.83
COL9A3-210ENST00000472880 DKK4Q9UBT3 224 aa20.24■□□□□ 0.83
COL9A3-210ENST00000472880 GPSM3Q9Y4H4 160 aa20.24■□□□□ 0.83
COL9A3-210ENST00000472880 E9PAM4 449 aa20.23■□□□□ 0.83
COL9A3-210ENST00000472880 PRAMEF26H0Y7S4 382 aa20.23■□□□□ 0.83
COL9A3-210ENST00000472880 CBX4O00257 560 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms