RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 ELF1P32519 619 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 PGM1P36871 562 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 FDFT1P37268 417 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 PLD1Q13393 1074 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 CUL3Q13618 768 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 ITIH4Q14624 930 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 SERINC5Q86VE9 423 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 TEKT4Q8WW24 435 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 PSMG2Q969U7 264 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 NUF2Q9BZD4 464 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 DERAQ9Y315 318 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 PTPRRQ15256 657 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 PARP6Q2NL67 630 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 ALFQ53S48 1182 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 SPDYCQ5MJ68 293 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 OR7D4Q8NG98 312 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 TBC1D10AQ9BXI6 508 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 MUC3BQ9H195 1237 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 KDM4CQ9H3R0 1056 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 IL1RL2Q9HB29 575 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 LGALS13Q9UHV8 139 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 FBXW11Q9UKB1 542 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 DCXO43602 365 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 RALBP11234 206 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 NR2C2P49116 596 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 RPS24P62847 133 aaKnown RBP14□□□□□ -0.17
CCDC88A-211ENST00000471947 SLC25A3Q00325 362 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 ASPHQ12797 758 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 COL9A2Q14055 689 aaPredicted RBP14□□□□□ -0.17
CCDC88A-211ENST00000471947 TPGS1Q6ZTW0 290 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 TMEM173Q86WV6 379 aaPredicted RBP14□□□□□ -0.17
CCDC88A-211ENST00000471947 SNX15Q9NRS6 342 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 FAM50BQ9Y247 325 aa14□□□□□ -0.17
CCDC88A-211ENST00000471947 UNC80Q8N2C7 3258 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 CNTRLQ7Z7A1 2325 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 FBXO21O94952 628 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 FSBPO95073 299 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 ATP6V1G2O95670 118 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 ATXN8OSP0DMR3 200 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 CYBAP13498 195 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 YWHAQP27348 245 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 SPRP35270 261 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 ENPEPQ07075 957 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 TSTA3Q13630 321 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 MUM1Q2TAK8 710 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 ESAMQ96AP7 390 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 OXNAD1Q96HP4 312 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 FAM96AQ9H5X1 160 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 EFR3BQ9Y2G0 817 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 PCDHA11Q9Y5I1 949 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 PAPPA2Q9BXP8 1791 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 ACRP10323 421 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 CPA3P15088 417 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 SLC10A7Q0GE19 358 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 POM121L1PQ3SYA9 428 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 TEX44Q53QW1 395 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 ALKAL1Q6UXT8 129 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 N4BP2L2Q92802 583 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 ALKBH8Q96BT7 664 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 ARHGEF38Q9NXL2 777 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 EME2A4GXA9 379 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 AURKAO14965 403 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 CHUKO15111 745 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 TYROBPO43914 113 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 TLR5O60602 858 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 CRCPO75575 148 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 F9P00740 461 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 PDE1CQ14123 709 aaPredicted RBP13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 GRM3Q14832 879 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 C1orf146Q5VVC0 180 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 DCP1BQ8IZD4 617 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 TMEM86AQ8N2M4 240 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 SREK1Q8WXA9 508 aaKnown RBP13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 HDAC11Q96DB2 347 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 ZBED2Q9BTP6 218 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 PCDHB5Q9Y5E4 795 aa13.99□□□□□ -0.17
CCDC88A-211ENST00000471947 BHMG1C9JSJ3 638 aaPredicted RBP13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 C2P06681 752 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 HOXD10P28358 340 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 EPHA3P29320 983 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 ACVRL1P37023 503 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 CDH13P55290 713 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 ANKRD20A4Q4UJ75 823 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 NAPRTQ6XQN6 538 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 TAS2R42Q7RTR8 314 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 TAS1R1Q7RTX1 841 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 ZNF598Q86UK7 904 aaKnown RBP13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 HMCESQ96FZ2 354 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 F5P12259 2224 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 PRR5-ARHGAP8B1AHC4 643 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 SLC10A3P09131 477 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 PGAM1P18669 254 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 SLC1A6P48664 564 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 ARHGAP8P85298 464 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 TAF11Q15544 211 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 C6orf163Q5TEZ5 329 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 MARC1Q5VT66 337 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 FSTL4Q6MZW2 842 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 SLC24A5Q71RS6 500 aa13.98□□□□□ -0.17
CCDC88A-211ENST00000471947 CACUL1Q86Y37 369 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms