RNA–Protein interactions for RNA: ENST00000458268.5

USP39-209, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 751 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-209ENST00000458268 RNF8O76064 485 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 MT-CO1P00395 513 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 FAM228BP0C875 321 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 SRCP12931 536 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 EPHB2P29323 1055 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 ACSL1P33121 698 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 EIF4A3P38919 411 aaKnown RBP19.14■□□□□ 0.65
USP39-209ENST00000458268 DNA2P51530 1060 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 GNA12Q03113 381 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 SYCP2LQ5T4T6 812 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 DCAF12L1Q5VU92 463 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 DAB2IPQ5VWQ8 1189 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 METTL3Q86U44 580 aaKnown RBP19.14■□□□□ 0.65
USP39-209ENST00000458268 VSTM4Q8IW00 320 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 SH2D3CQ8N5H7 860 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 KDM1BQ8NB78 822 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 OR8D1Q8WZ84 308 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 EPAS1Q99814 870 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 NUSAP1Q9BXS6 441 aaKnown RBP19.14■□□□□ 0.65
USP39-209ENST00000458268 BTBD1Q9H0C5 482 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 THAP2Q9H0W7 228 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 TNKS2Q9H2K2 1166 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 PABPC3Q9H361 631 aaKnown RBP19.14■□□□□ 0.65
USP39-209ENST00000458268 DHX35Q9H5Z1 703 aaKnown RBP19.14■□□□□ 0.65
USP39-209ENST00000458268 MRPL47Q9HD33 250 aaKnown RBP19.14■□□□□ 0.65
USP39-209ENST00000458268 NDFIP2Q9NV92 336 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 ZNHIT6Q9NWK9 470 aaKnown RBP19.14■□□□□ 0.65
USP39-209ENST00000458268 FBXL12Q9NXK8 326 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 ARHGAP20Q9P2F6 1191 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 PPARGC1AQ9UBK2 798 aaKnown RBP19.14■□□□□ 0.65
USP39-209ENST00000458268 AP4E1Q9UPM8 1137 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 SPTBN4Q9H254 2564 aa19.14■□□□□ 0.65
USP39-209ENST00000458268 ILVBLA1L0T0 632 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 TMEM191CA6NGB0 347 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 PLK4O00444 970 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 FSBPO95073 299 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 MYBL1P10243 752 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 RHOQP17081 205 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 SLC8A1P32418 973 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 ACVRL1P37023 503 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 SSR1P43307 286 aaKnown RBP19.13■□□□□ 0.65
USP39-209ENST00000458268 MAPK8P45983 427 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 ADKP55263 362 aaKnown RBP19.13■□□□□ 0.65
USP39-209ENST00000458268 ZNF252P-AS1Q0IIN9 211 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 TRIM14Q14142 442 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 WDR45BQ5MNZ6 344 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 MANEALQ5VSG8 457 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 HDDC3Q8N4P3 179 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 ZCCHC9Q8N567 271 aaKnown RBP19.13■□□□□ 0.65
USP39-209ENST00000458268 DCAF4L2Q8NA75 395 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 NETO1Q8TDF5 533 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 FOXJ1Q92949 421 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 GTPBP2Q9BX10 602 aaKnown RBP19.13■□□□□ 0.65
USP39-209ENST00000458268 ISCUQ9H1K1 167 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 C6orf106Q9H6K1 298 aaPredicted RBP19.13■□□□□ 0.65
USP39-209ENST00000458268 SERGEFQ9UGK8 458 aa19.13■□□□□ 0.65
USP39-209ENST00000458268 CEP250Q9BV73 2442 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 DCDC2BA2VCK2 349 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 DAPK3O43293 454 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 SMAD6O43541 496 aaKnown RBP19.12■□□□□ 0.65
USP39-209ENST00000458268 PRPSAP2O60256 369 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 FOXD2O60548 495 aaPredicted RBP19.12■□□□□ 0.65
USP39-209ENST00000458268 SEMA4FO95754 770 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 TPI1P60174 286 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 IRX4P78413 519 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 ZBTB16Q05516 673 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 GFPT1Q06210 699 aaPredicted RBP19.12■□□□□ 0.65
USP39-209ENST00000458268 ELAVL3Q14576 367 aaKnown RBP19.12■□□□□ 0.65
USP39-209ENST00000458268 UAP1L1Q3KQV9 507 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 SPDYCQ5MJ68 293 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 ALKBH5Q6P6C2 394 aaKnown RBP19.12■□□□□ 0.65
USP39-209ENST00000458268 BTBD6Q96KE9 485 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 FAM129BQ96TA1 746 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 SNRNP25Q9BV90 132 aaKnown RBP19.12■□□□□ 0.65
USP39-209ENST00000458268 NUP85Q9BW27 656 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 EIF2B4Q9UI10 523 aaKnown RBP19.12■□□□□ 0.65
USP39-209ENST00000458268 PILRBQ9UKJ0 227 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 ACTL7AQ9Y615 435 aa19.12■□□□□ 0.65
USP39-209ENST00000458268 LNP1A1A4G5 178 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 ATP9BO43861 1147 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 RAMP2O60895 175 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 ADH1BP00325 375 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 GJC1P36383 396 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 RECQLP46063 649 aaPredicted RBP19.11■□□□□ 0.65
USP39-209ENST00000458268 MAPKAPK2P49137 400 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 METAP1P53582 386 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 ATXN3P54252 364 aaPredicted RBP19.11■□□□□ 0.65
USP39-209ENST00000458268 NRG1Q02297 640 aaPredicted RBP19.11■□□□□ 0.65
USP39-209ENST00000458268 SCAPQ12770 1279 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 CA9Q16790 459 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 PPP6R3Q5H9R7 873 aaPredicted RBP19.11■□□□□ 0.65
USP39-209ENST00000458268 RETSATQ6NUM9 610 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 C22orf39Q6P5X5 142 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 DSG4Q86SJ6 1040 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 RYBPQ8N488 228 aaPredicted RBP19.11■□□□□ 0.65
USP39-209ENST00000458268 OR8K1Q8NGG5 319 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 GRIN3AQ8TCU5 1115 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 FRS2Q8WU20 508 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 ARHGEF26Q96DR7 871 aa19.11■□□□□ 0.65
USP39-209ENST00000458268 CCDC114Q96M63 670 aa19.11■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms